Variant report

Variant	rs929533
Chromosome Location	chr3:51975577-51975578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4687792	0.98[ASN][1000 genomes]
rs4687798	0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
3	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
4	nsv1003453	chr3:51962081-52099441	Active TSS Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	esv1804090	chr3:51962081-52140591	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	esv1835339	chr3:51962081-52140591	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv590280	chr3:51967439-51978327	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
8	nsv1003581	chr3:51973395-52108645	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv1001062	chr3:51973395-52134638	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51974200-51975600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr3:51974400-51975600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:51974400-51975600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr3:51974400-51975600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:51974400-51976000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:51974400-51976400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:51974400-51976400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:51974400-51976400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr3:51974400-51976400	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr3:51974600-51975600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:51974600-51975600	Flanking Active TSS	Osteobl	bone
12	chr3:51974600-51975800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr3:51974600-51975800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr3:51974600-51976000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:51974600-51976600	Active TSS	A549	lung
16	chr3:51974600-51976800	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr3:51974800-51975600	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr3:51974800-51975600	Flanking Active TSS	Fetal Brain Male	brain
19	chr3:51974800-51975600	Flanking Active TSS	Fetal Brain Female	brain
20	chr3:51974800-51975600	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr3:51974800-51975600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr3:51974800-51975600	Flanking Active TSS	Stomach Mucosa	stomach
23	chr3:51974800-51975800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr3:51974800-51975800	Flanking Active TSS	HUVEC	blood vessel
25	chr3:51974800-51976200	Active TSS	NHLF	lung
26	chr3:51974800-51976600	Active TSS	H9 Cell Line	embryonic stem cell
27	chr3:51974800-51976600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:51974800-51976600	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr3:51975000-51975600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:51975000-51975600	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr3:51975000-51975600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr3:51975000-51975600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr3:51975000-51975600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr3:51975000-51975600	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr3:51975000-51975600	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr3:51975000-51975600	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr3:51975000-51975600	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr3:51975000-51975600	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr3:51975000-51975600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr3:51975000-51975600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr3:51975000-51975600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr3:51975000-51975600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr3:51975000-51975600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr3:51975000-51975800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr3:51975000-51975800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr3:51975000-51975800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:51975000-51975800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:51975000-51975800	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr3:51975000-51975800	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr3:51975000-51975800	Flanking Active TSS	Fetal Thymus	thymus

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