Variant report

Variant	rs9295660
Chromosome Location	chr6:25448237-25448238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25441775..25443784-chr6:25446785..25449168,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10214744	1.00[ASW][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10946781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461169	0.86[ASW][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap]
rs9461172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25411000-25451800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:25418800-25462600	Weak transcription	Ovary	ovary
3	chr6:25433400-25472600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:25434200-25450200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:25436200-25481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:25438200-25472600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:25442000-25455600	Weak transcription	Aorta	Aorta
8	chr6:25442400-25449600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:25443200-25472600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:25446400-25450000	Weak transcription	Fetal Brain Male	brain
11	chr6:25446600-25448600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:25446600-25448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:25446600-25449400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:25446600-25460000	Weak transcription	Fetal Lung	lung
15	chr6:25446800-25449600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:25446800-25450200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:25446800-25450800	Enhancers	HMEC	breast
18	chr6:25446800-25451000	Enhancers	NHEK	skin
19	chr6:25446800-25451400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:25446800-25454200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:25446800-25454200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:25446800-25493600	Weak transcription	Left Ventricle	heart
23	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
24	chr6:25447000-25448600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:25447000-25448600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:25447000-25449600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:25447000-25450600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:25447000-25450800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:25447000-25450800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:25447000-25451600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:25447200-25448400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:25447200-25448800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:25447400-25452200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:25447400-25473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:25447600-25448400	Strong transcription	Thymus	Thymus
36	chr6:25447600-25449600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:25447800-25448400	Enhancers	Brain Anterior Caudate	brain
38	chr6:25447800-25448400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:25447800-25448400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr6:25447800-25449000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:25447800-25449000	Enhancers	Spleen	Spleen
42	chr6:25447800-25449400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:25447800-25449400	Strong transcription	Fetal Intestine Small	intestine
44	chr6:25447800-25449800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:25447800-25449800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:25447800-25449800	Genic enhancers	Fetal Thymus	thymus
47	chr6:25447800-25450800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:25447800-25453800	Weak transcription	Primary T cells from cord blood	blood
49	chr6:25448000-25448400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:25448000-25448400	Enhancers	HepG2	liver

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