Variant report
| Variant | rs9295745 |
|---|---|
| Chromosome Location | chr6:27717550-27717551 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27713706..27716261-chr6:27717105..27720222,3 | K562 | blood: | |
| 2 | chr6:27655370..27657742-chr6:27715050..27717959,2 | K562 | blood: | |
| 3 | chr6:27716568..27718796-chr6:27718856..27720931,2 | K562 | blood: | |
| 4 | chr6:27713445..27716447-chr6:27717145..27720805,5 | K562 | blood: | |
| 5 | chr6:27686786..27690624-chr6:27717358..27721129,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12333239 | 1.00[YRI][hapmap] |
| rs9295737 | 1.00[CEU][hapmap] |
| rs9461403 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs9461412 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs9468175 | 1.00[CEU][hapmap] |
| rs9468177 | 1.00[CEU][hapmap] |
| rs9468216 | 1.00[CEU][hapmap] |
| rs9468226 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs9468230 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9468235 | 0.84[AFR][1000 genomes] |
| rs9468236 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022797 | chr6:27396961-27864277 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 390 gene(s) | inside rSNPs | diseases |
| 2 | nsv883510 | chr6:27550712-27730064 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv830618 | chr6:27593274-27789605 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 143 gene(s) | inside rSNPs | diseases |
| 4 | nsv1031337 | chr6:27596676-27734884 | Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 5 | nsv601205 | chr6:27656255-27730064 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27715000-27719600 | Weak transcription | GM12878-XiMat | blood |
