Variant report

Variant	rs9296245
Chromosome Location	chr6:38295572-38295573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12181218	1.00[EUR][1000 genomes]
rs4711537	0.95[YRI][hapmap]
rs60588879	1.00[EUR][1000 genomes]
rs6902042	1.00[AMR][1000 genomes]
rs6903799	1.00[CEU][hapmap]
rs6920740	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs73422890	1.00[EUR][1000 genomes]
rs9462430	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470853	1.00[EUR][1000 genomes]
rs9470858	1.00[AMR][1000 genomes]
rs9470869	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470870	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470871	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470872	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38275400-38301200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:38278000-38310600	Weak transcription	Gastric	stomach
3	chr6:38278400-38305400	Weak transcription	Pancreas	Pancrea
4	chr6:38282600-38301400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:38283000-38304000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:38284200-38296000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:38284800-38301200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:38287400-38301200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:38287600-38301200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:38288000-38305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:38289200-38295600	Weak transcription	Fetal Stomach	stomach
13	chr6:38289200-38301000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:38291000-38296000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:38291000-38305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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