Variant report

Variant	rs9296287
Chromosome Location	chr6:39047845-39047846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39047800..39050333-chr6:39052277..39054288,2	K562	blood:
2	chr6:39046271..39047893-chr6:39050344..39052466,2	K562	blood:
3	chr6:39040219..39042267-chr6:39046191..39048280,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1042044	0.89[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1076733	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1126476	0.85[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs12214482	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs2235868	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs2268644	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2300615	0.80[JPT][hapmap]
rs2300616	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3765466	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs7341356	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs7341358	0.85[CHB][hapmap]
rs7766068	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7766228	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7766275	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7766663	0.81[JPT][hapmap]
rs910162	0.80[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs910163	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs910165	0.81[JPT][hapmap]
rs910170	0.87[MEX][hapmap]
rs9296283	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs9296288	0.88[CEU][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs932443	0.83[CHB][hapmap]
rs9357298	0.90[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv470815	chr6:39022698-39051694	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519907	chr6:39032415-39055012	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1031922	chr6:39034484-39060762	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1793081	chr6:39034516-39048562	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39021200-39072000	Weak transcription	Gastric	stomach
2	chr6:39024200-39057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:39027400-39073000	Weak transcription	Pancreas	Pancrea
4	chr6:39033600-39052200	Weak transcription	Right Ventricle	heart
5	chr6:39036400-39050200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:39043200-39050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:39045200-39054000	Weak transcription	Right Atrium	heart
9	chr6:39045600-39051600	Weak transcription	Fetal Heart	heart
10	chr6:39047400-39053000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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