Variant report

Variant	rs9296763
Chromosome Location	chr6:54563937-54563938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54558970..54566519-chr6:54708534..54713743,16	MCF-7	breast:
2	chr6:54563782..54566701-chr6:54762502..54764565,2	MCF-7	breast:
3	chr6:54551257..54553977-chr6:54562035..54564580,2	MCF-7	breast:
4	chr6:54562484..54564963-chr6:54735331..54738094,2	MCF-7	breast:
5	chr6:54559522..54567174-chr6:54707552..54714330,37	MCF-7	breast:
6	chr6:54485033..54487186-chr6:54562620..54564688,2	MCF-7	breast:
7	chr6:54561977..54564257-chr6:54570191..54572297,2	MCF-7	breast:
8	chr6:54562310..54563986-chr6:54587468..54589771,2	MCF-7	breast:
9	chr6:54562300..54564099-chr6:54779694..54781853,2	MCF-7	breast:
10	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
11	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10948841	1.00[AFR][1000 genomes]
rs56708352	1.00[AFR][1000 genomes]
rs9474963	0.89[AFR][1000 genomes]
rs9474969	1.00[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54562400-54564200	Enhancers	NHEK	skin
2	chr6:54562400-54565400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:54562600-54565400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:54562800-54564000	Enhancers	HMEC	breast
5	chr6:54563000-54564000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:54563000-54564200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:54563200-54564200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:54563400-54564200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:54563400-54564200	Weak transcription	Fetal Lung	lung
10	chr6:54563400-54565000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:54563600-54564400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:54563600-54564600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:54563800-54564200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:54563800-54564200	Enhancers	GM12878-XiMat	blood
15	chr6:54563800-54564400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:54563800-54564400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:54563800-54564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:54563800-54565200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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