Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:90810688..90812516-chr8:90813829..90816588,2	MCF-7	breast:
2	chr8:90808879..90811361-chr8:90813296..90815805,3	K562	blood:
3	chr8:90812604..90815452-chr8:90823390..90825028,2	MCF-7	breast:
4	chr8:90768512..90770810-chr8:90812946..90815331,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000251136	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10087807	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10097279	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10100184	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10102596	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10504881	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs16900627	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16900650	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16900684	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1978129	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2158131	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs218924	0.84[ASN][1000 genomes]
rs218926	0.84[ASN][1000 genomes]
rs218927	0.84[ASN][1000 genomes]
rs218937	0.84[ASN][1000 genomes]
rs218939	0.84[ASN][1000 genomes]
rs28565967	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28657795	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs56017098	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60569724	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6981112	0.89[ASN][1000 genomes]
rs73291423	0.84[ASN][1000 genomes]
rs73293110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73694475	0.84[ASN][1000 genomes]
rs7844627	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90783800-90829000	Weak transcription	Aorta	Aorta
2	chr8:90805400-90817000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:90810400-90817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:90813800-90815800	Weak transcription	Placenta	Placenta
5	chr8:90814000-90817000	Weak transcription	Stomach Mucosa	stomach
6	chr8:90814000-90817800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:90814000-90824600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:90814200-90816200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:90814200-90817000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:90814200-90817000	Weak transcription	Pancreas	Pancrea
11	chr8:90814200-90817000	Weak transcription	NH-A	brain
12	chr8:90814400-90816800	Weak transcription	K562	blood
13	chr8:90814600-90815200	Weak transcription	Osteobl	bone
14	chr8:90814600-90817000	Weak transcription	A549	lung
15	chr8:90814600-90823400	Weak transcription	NHDF-Ad	bronchial
16	chr8:90814800-90816800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:90814800-90817000	Weak transcription	HepG2	liver

Quick Search: