Variant report

Variant	rs9297956
Chromosome Location	chr8:96283566-96283567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP2	chr8:96280774-96283681	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96111950..96115004-chr8:96279819..96283605,3	MCF-7	breast:
2	chr8:96280353..96283480-chr8:96283563..96287896,7	K562	blood:
3	chr8:95834579..95836869-chr8:96281817..96284598,2	K562	blood:
4	chr8:95907099..95910081-chr8:96279389..96285203,6	K562	blood:
5	chr8:96282451..96284903-chr8:96296240..96298528,2	K562	blood:
6	chr8:96266342..96268440-chr8:96282035..96284401,2	K562	blood:

No data

Variant related genes	Relation type
C8orf37	TF binding region
ENSG00000164941	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000156172	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10956943	0.81[ASN][1000 genomes]
rs13258855	0.80[ASN][1000 genomes]
rs13259182	0.82[ASN][1000 genomes]
rs13263562	0.90[ASN][1000 genomes]
rs13263858	0.89[ASN][1000 genomes]
rs13270711	0.88[ASN][1000 genomes]
rs13279671	0.89[ASN][1000 genomes]
rs1441394	0.88[ASN][1000 genomes]
rs1530257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669929	0.86[ASN][1000 genomes]
rs2083616	0.81[ASN][1000 genomes]
rs2439629	0.92[ASN][1000 genomes]
rs2439630	0.92[ASN][1000 genomes]
rs2514551	0.92[ASN][1000 genomes]
rs2514552	0.92[ASN][1000 genomes]
rs2514553	0.92[ASN][1000 genomes]
rs2514557	0.82[AMR][1000 genomes]
rs2514574	0.92[ASN][1000 genomes]
rs4492337	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815255	0.96[ASN][1000 genomes]
rs7820512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876260	0.92[ASN][1000 genomes]
rs876261	0.88[ASN][1000 genomes]
rs879997	0.80[ASN][1000 genomes]
rs9297955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9649978	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96282400-96285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96282800-96283600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:96282800-96283600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:96282800-96283600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:96282800-96283600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:96282800-96283600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:96282800-96283600	Enhancers	Fetal Brain Female	brain
8	chr8:96282800-96283600	Enhancers	Fetal Heart	heart
9	chr8:96282800-96283600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:96282800-96283600	Enhancers	Fetal Stomach	stomach
11	chr8:96282800-96283600	Enhancers	Stomach Mucosa	stomach
12	chr8:96282800-96285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:96282800-96286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:96283000-96283600	Enhancers	Brain Anterior Caudate	brain
15	chr8:96283000-96283600	Enhancers	Osteobl	bone
16	chr8:96283000-96283800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:96283000-96285400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:96283000-96285600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:96283000-96285600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:96283000-96285600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:96283000-96286000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:96283200-96283600	Enhancers	Primary B cells from cord blood	blood
23	chr8:96283200-96283600	Enhancers	Fetal Lung	lung
24	chr8:96283200-96283600	Flanking Active TSS	Hela-S3	cervix
25	chr8:96283200-96283800	Enhancers	Fetal Thymus	thymus
26	chr8:96283200-96284600	Weak transcription	Placenta	Placenta
27	chr8:96283200-96285800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:96283200-96286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:96283400-96283600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:96283400-96283600	Enhancers	Primary T cells from cord blood	blood
31	chr8:96283400-96283600	Enhancers	Primary hematopoietic stem cells	blood
32	chr8:96283400-96283600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr8:96283400-96283600	Enhancers	Pancreas	Pancrea
34	chr8:96283400-96283800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:96283400-96283800	Enhancers	Fetal Intestine Large	intestine
36	chr8:96283400-96283800	Enhancers	Dnd41	blood
37	chr8:96283400-96285000	Weak transcription	HepG2	liver
38	chr8:96283400-96285200	Weak transcription	Small Intestine	intestine
39	chr8:96283400-96285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:96283400-96286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:96283400-96286000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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