Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10957258	0.89[ASN][1000 genomes]
rs11991038	0.88[ASN][1000 genomes]
rs11998097	0.83[ASN][1000 genomes]
rs12056376	0.89[ASN][1000 genomes]
rs12056579	0.89[ASN][1000 genomes]
rs12056580	0.87[ASN][1000 genomes]
rs12056836	0.89[ASN][1000 genomes]
rs12056842	0.88[ASN][1000 genomes]
rs12545051	0.89[ASN][1000 genomes]
rs12549451	0.89[ASN][1000 genomes]
rs12549493	0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13261995	0.90[ASN][1000 genomes]
rs13268472	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs16929986	0.89[ASN][1000 genomes]
rs16930092	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs34147228	0.89[ASN][1000 genomes]
rs34900466	0.89[ASN][1000 genomes]
rs57802569	0.81[ASN][1000 genomes]
rs7008796	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs989240	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9298070	CLVS1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain

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