Variant report

Variant	rs9298298
Chromosome Location	chr8:78315241-78315242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10081398	1.00[YRI][hapmap]
rs10086963	1.00[YRI][hapmap]
rs13260045	1.00[YRI][hapmap]
rs13261069	0.87[EUR][1000 genomes]
rs1399609	0.89[ASN][1000 genomes]
rs1515076	0.80[EUR][1000 genomes]
rs2138144	0.90[EUR][1000 genomes]
rs2879304	0.89[EUR][1000 genomes]
rs4146457	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs4265174	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4284036	0.90[EUR][1000 genomes]
rs7822853	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844933	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891047	chr8:78265312-78322329	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891048	chr8:78271372-78322329	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78311400-78315800	Active TSS	Fetal Muscle Leg	muscle
2	chr8:78313800-78316200	Weak transcription	Adipose Nuclei	Adipose
3	chr8:78313800-78318000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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