Variant report

Variant	rs9298420
Chromosome Location	chr8:85125063-85125064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85124259..85125882-chr8:85131139..85133298,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10096382	0.95[CEU][hapmap];0.82[YRI][hapmap]
rs10096464	0.89[EUR][1000 genomes]
rs10099399	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10100325	0.88[EUR][1000 genomes]
rs10103144	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10108228	0.85[EUR][1000 genomes]
rs10111724	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10111779	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10112043	0.85[EUR][1000 genomes]
rs10112056	0.85[EUR][1000 genomes]
rs10112178	0.88[EUR][1000 genomes]
rs10113234	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs10113425	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10504797	0.90[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs10504798	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10958213	0.89[EUR][1000 genomes]
rs11780481	0.89[EUR][1000 genomes]
rs11785851	1.00[CEU][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs11787298	0.89[EUR][1000 genomes]
rs12375297	0.85[CEU][hapmap]
rs12375329	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs12375330	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs12375429	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs13263706	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1437515	0.89[EUR][1000 genomes]
rs16912522	0.90[CEU][hapmap]
rs16912524	0.86[EUR][1000 genomes]
rs17708185	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17708369	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs1978828	0.90[CEU][hapmap];0.86[TSI][hapmap]
rs2196615	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2196616	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs2217977	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs2217978	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs35196647	0.89[EUR][1000 genomes]
rs35505211	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55695735	0.89[EUR][1000 genomes]
rs62529180	0.89[EUR][1000 genomes]
rs6473531	0.85[CEU][hapmap]
rs766560	0.83[EUR][1000 genomes]
rs766561	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7818732	0.90[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs7841226	0.85[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7845564	0.85[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs9298421	0.89[EUR][1000 genomes]
rs9298422	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs959433	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85121600-85128800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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