Variant report

Variant	rs9298496
Chromosome Location	chr8:54855680-54855681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13278745	0.83[ASW][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap]
rs16919680	0.88[ASW][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap]
rs16919692	0.96[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs3816772	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs729016	0.96[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2758160	chr8:54832990-55016965	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759617	chr8:54832990-55016965	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv427821	chr8:54832990-55016965	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv1833796	chr8:54855680-54866491	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54845000-54857600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:54850000-54857400	Weak transcription	Brain Anterior Caudate	brain
3	chr8:54850400-54856000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:54851000-54856000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:54851200-54872600	Weak transcription	Brain Germinal Matrix	brain
6	chr8:54852200-54872600	Weak transcription	Fetal Brain Female	brain
7	chr8:54852400-54872600	Weak transcription	Esophagus	oesophagus
8	chr8:54852600-54856200	Weak transcription	NHDF-Ad	bronchial
9	chr8:54853200-54856800	Weak transcription	HUVEC	blood vessel
10	chr8:54853400-54857600	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:54853600-54857600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:54853800-54855800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:54853800-54856200	Weak transcription	NHLF	lung
14	chr8:54853800-54856800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:54853800-54857800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:54853800-54857800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:54853800-54869000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:54854000-54855800	Weak transcription	A549	lung
19	chr8:54854400-54856000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:54854600-54859200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:54855000-54857200	Enhancers	GM12878-XiMat	blood
22	chr8:54855000-54858000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:54855200-54856000	Enhancers	NHEK	skin
24	chr8:54855200-54857400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:54855200-54858400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:54855400-54856400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:54855400-54857800	Enhancers	HMEC	breast
28	chr8:54855600-54856400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:54855600-54856800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:54855600-54856800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr8:54855600-54857400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr8:54855600-54857600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:54855600-54857800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:54855600-54857800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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