Variant report

Variant	rs9298665
Chromosome Location	chr9:11135805-11135806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10809355	0.84[ASN][1000 genomes]
rs10959551	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10959552	0.82[ASN][1000 genomes]
rs10959556	0.86[ASN][1000 genomes]
rs12339979	0.82[ASN][1000 genomes]
rs12344272	0.82[ASN][1000 genomes]
rs12353332	0.82[ASN][1000 genomes]
rs1931408	0.84[ASN][1000 genomes]
rs7859539	0.85[ASN][1000 genomes]
rs7870863	1.00[EUR][1000 genomes]
rs9657582	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv529475	chr9:10648009-11435662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869473	chr9:10648009-11457399	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1023275	chr9:10681431-11191502	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv613405	chr9:10692461-11139558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv613407	chr9:10753219-11280652	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1021035	chr9:10755356-11281192	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv917281	chr9:10786005-11277779	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1024662	chr9:10786074-11244071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv539999	chr9:10786074-11244071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1015239	chr9:10992230-11246257	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1019436	chr9:11033008-11247205	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1029084	chr9:11089044-11218434	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv540001	chr9:11089044-11218434	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1030741	chr9:11089044-11246257	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv466175	chr9:11111223-11139558	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv613412	chr9:11111223-11139558	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv466176	chr9:11111223-11181420	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv613413	chr9:11111223-11181420	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv466177	chr9:11117514-11155468	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv613414	chr9:11117514-11155468	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv892335	chr9:11117514-11259755	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv892336	chr9:11117514-11419061	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	esv3444953	chr9:11123148-11256689	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv973428	chr9:11128526-11140177	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv466178	chr9:11129139-11155468	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
30	nsv613415	chr9:11129139-11155468	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv466179	chr9:11129139-11159953	Enhancers Bivalent Enhancer Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	nsv613416	chr9:11129139-11159953	Weak transcription Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
33	nsv466180	chr9:11129139-11196016	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv613417	chr9:11129139-11196016	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9298665	NUDT16	trans	brain	seeQTL
rs9298665	VWA5B2	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11132000-11136000	Weak transcription	Fetal Lung	lung
2	chr9:11135800-11136200	Enhancers	Fetal Heart	heart

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