Variant report

Variant	rs9298829
Chromosome Location	chr9:2195180-2195181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10118871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10119676	1.00[EUR][1000 genomes]
rs12345888	1.00[EUR][1000 genomes]
rs28566172	1.00[EUR][1000 genomes]
rs7868308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016148	chr9:1457605-2361750	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv539916	chr9:1457605-2361750	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1021712	chr9:1647840-2216839	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv539921	chr9:1647840-2216839	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022063	chr9:2094860-2215240	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv539926	chr9:2094860-2215240	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892056	chr9:2124140-2227217	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv892057	chr9:2144687-2241994	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2145200-2197600	Weak transcription	K562	blood
2	chr9:2159200-2196400	Weak transcription	Stomach Mucosa	stomach
3	chr9:2173200-2201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:2178600-2196800	Weak transcription	HepG2	liver
5	chr9:2179400-2202800	Weak transcription	Psoas Muscle	Psoas
6	chr9:2180000-2196000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:2180000-2197400	Strong transcription	Liver	Liver
8	chr9:2180800-2198800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr9:2181000-2196800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:2181400-2196600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:2181400-2197200	Strong transcription	GM12878-XiMat	blood
12	chr9:2181600-2196000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:2181600-2196400	Strong transcription	Fetal Muscle Leg	muscle
14	chr9:2181600-2198200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr9:2181600-2198800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:2181600-2199200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:2181600-2199400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:2181800-2196200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:2181800-2196200	Strong transcription	Adipose Nuclei	Adipose
20	chr9:2181800-2196200	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:2181800-2196200	Strong transcription	Dnd41	blood
22	chr9:2181800-2196400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:2181800-2196400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr9:2181800-2198000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr9:2181800-2198200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr9:2181800-2198200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:2182000-2196400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:2182000-2198200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:2182400-2198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:2182400-2199200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:2182600-2197400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:2183200-2196200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:2183200-2196400	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:2184800-2195600	Weak transcription	NH-A	brain
35	chr9:2185200-2196600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr9:2185400-2196000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr9:2186400-2197800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:2187600-2195200	Weak transcription	Osteobl	bone
39	chr9:2187600-2197400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:2187600-2198200	Weak transcription	Thymus	Thymus
41	chr9:2188000-2201600	Weak transcription	Small Intestine	intestine
42	chr9:2188400-2202400	Strong transcription	Primary T cells from cord blood	blood
43	chr9:2188600-2196400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr9:2188600-2197800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:2188600-2198400	Strong transcription	Primary B cells from cord blood	blood
46	chr9:2188800-2195800	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:2188800-2196400	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr9:2189000-2195800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:2189000-2199000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:2189400-2195200	Weak transcription	HMEC	breast

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