Variant report

Variant	rs9299772
Chromosome Location	chr10:38661831-38661832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17595292	0.80[ASN][1000 genomes]
rs2145672	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2754361	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2754493	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2754495	0.80[EUR][1000 genomes]
rs2800551	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2800552	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2804624	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2804637	0.82[ASN][1000 genomes]
rs2804638	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2804639	0.80[AMR][1000 genomes]
rs2804677	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482064	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv33710	chr10:38545898-38671289	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv947859	chr10:38633447-38674546	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9299772	ZNF37A///ZNF37B	Cis_1M	lymphoblastoid	RTeQTL
rs9299772	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL
rs9299772	HSD17B7P2	cis	Whole Blood	GTEx

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38645800-38662200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:38645800-38662400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:38645800-38669000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:38646000-38662200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:38646000-38665200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:38646000-38670600	Weak transcription	Fetal Stomach	stomach
7	chr10:38646200-38662400	Weak transcription	Osteobl	bone
8	chr10:38646200-38667000	Weak transcription	Fetal Intestine Small	intestine
9	chr10:38646200-38669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:38646200-38669200	Weak transcription	Right Ventricle	heart
11	chr10:38646400-38662200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:38646400-38662200	Weak transcription	NHLF	lung
13	chr10:38646600-38662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:38648200-38662000	Strong transcription	Liver	Liver
15	chr10:38648200-38668600	Weak transcription	HUVEC	blood vessel
16	chr10:38653000-38662000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:38655400-38669000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:38656000-38668600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:38656200-38669200	Weak transcription	Primary B cells from cord blood	blood
20	chr10:38656400-38662000	Weak transcription	A549	lung
21	chr10:38656400-38662200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:38656400-38668800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:38656400-38670000	Weak transcription	Fetal Lung	lung
24	chr10:38656600-38670600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:38657600-38662800	Weak transcription	HMEC	breast
26	chr10:38657600-38668600	Weak transcription	Fetal Thymus	thymus
27	chr10:38658200-38668400	Weak transcription	Placenta	Placenta
28	chr10:38658400-38662200	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:38658600-38663800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:38660400-38662600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:38660400-38666000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:38660600-38662200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:38660600-38662200	Weak transcription	Thymus	Thymus
34	chr10:38660600-38662800	Weak transcription	Gastric	stomach
35	chr10:38660600-38666600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:38660600-38667000	Weak transcription	Lung	lung
37	chr10:38660600-38667800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:38660600-38668600	Weak transcription	Brain Anterior Caudate	brain
39	chr10:38660600-38669000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:38660600-38669000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:38660600-38669000	Weak transcription	Spleen	Spleen
42	chr10:38660600-38670400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:38660600-38670600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:38660600-38671600	Weak transcription	HepG2	liver
45	chr10:38660800-38662600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:38660800-38665200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:38660800-38667200	Weak transcription	Primary T cells from cord blood	blood
48	chr10:38661000-38662600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:38661000-38663000	Weak transcription	Aorta	Aorta
50	chr10:38661000-38666200	Weak transcription	Ovary	ovary

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