Variant report

Variant	rs9301821
Chromosome Location	chr13:93213039-93213040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12863416	0.86[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs12874706	0.87[EUR][1000 genomes]
rs12876730	0.93[CEU][hapmap]
rs34832811	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71427578	0.80[EUR][1000 genomes]
rs71427582	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516079	0.86[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs9523707	0.93[CEU][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap]
rs9523719	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9301821	MIR17HG	cis	cerebellum	SCAN
rs9301821	FKBP1B	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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