Variant report

Variant	rs9302040
Chromosome Location	chr13:95694118-95694119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10219913	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189299	0.88[GIH][hapmap]
rs61967172	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61967173	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61967174	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61967175	0.80[ASN][1000 genomes]
rs7993878	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302042	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302043	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302044	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556455	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561768	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561769	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561770	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561771	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590168	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95668600-95712000	Weak transcription	NHDF-Ad	bronchial
3	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
5	chr13:95671400-95722200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:95672800-95729000	Weak transcription	Colonic Mucosa	Colon
7	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:95677800-95695400	Weak transcription	K562	blood
9	chr13:95677800-95718200	Weak transcription	HSMM	muscle
10	chr13:95678400-95694200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:95680000-95705000	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:95682000-95699200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:95682000-95718200	Weak transcription	Pancreas	Pancrea
14	chr13:95682800-95721800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
16	chr13:95683800-95725800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr13:95684200-95695200	Weak transcription	Osteobl	bone
18	chr13:95684400-95728200	Weak transcription	Adipose Nuclei	Adipose
19	chr13:95684600-95725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:95685000-95694600	Weak transcription	Left Ventricle	heart
21	chr13:95685000-95696200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:95685000-95721400	Weak transcription	Fetal Intestine Small	intestine
23	chr13:95685200-95695600	Weak transcription	Fetal Kidney	kidney
24	chr13:95685200-95734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:95686200-95694400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:95686800-95698000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:95686800-95702000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr13:95686800-95702400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr13:95686800-95722600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:95686800-95744600	Weak transcription	Esophagus	oesophagus
31	chr13:95687000-95722600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr13:95688200-95694200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:95688600-95711400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr13:95689600-95696800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr13:95690200-95695400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr13:95690600-95695800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr13:95690800-95694800	Strong transcription	NHLF	lung
38	chr13:95690800-95695200	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:95691000-95694200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:95691200-95694400	Weak transcription	Lung	lung
41	chr13:95691200-95710000	Weak transcription	Aorta	Aorta
42	chr13:95691200-95722400	Weak transcription	Fetal Stomach	stomach
43	chr13:95691600-95711200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr13:95691800-95702200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr13:95692000-95696000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr13:95692000-95711200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr13:95692000-95722400	Weak transcription	Spleen	Spleen
48	chr13:95692200-95695000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr13:95692200-95696000	Strong transcription	A549	lung
50	chr13:95692200-95722800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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