Variant report

Variant	rs9302049
Chromosome Location	chr13:95873985-95873986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95872874..95874567-chr13:95880822..95883621,2	K562	blood:
2	chr13:95873940..95876786-chr13:95925021..95926772,2	K562	blood:
3	chr13:95873367..95874349-chr17:73120044..73120824,2	Hela-S3	cervix:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508020	1.00[CHB][hapmap]
rs12584917	0.86[JPT][hapmap]
rs1564351	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs16952754	0.90[EUR][1000 genomes]
rs17189390	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs17189540	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs17268129	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs17268170	1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs17268275	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs17268282	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs1751027	0.88[JPT][hapmap];0.91[TSI][hapmap]
rs2009772	0.86[JPT][hapmap]
rs4148456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4148459	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4148466	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4148473	0.96[ASN][1000 genomes]
rs4148487	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs61965929	0.86[ASN][1000 genomes]
rs61965939	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61965965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61972720	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61972725	0.90[EUR][1000 genomes]
rs61972742	0.82[EUR][1000 genomes]
rs61972743	0.84[EUR][1000 genomes]
rs61972757	0.84[EUR][1000 genomes]
rs61972758	0.84[EUR][1000 genomes]
rs61972759	0.84[EUR][1000 genomes]
rs74105457	0.83[ASN][1000 genomes]
rs74105487	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs873705	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9302048	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9516540	0.96[ASN][1000 genomes]
rs9590204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9590205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95840400-95874400	Weak transcription	Pancreas	Pancrea
2	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
3	chr13:95847800-95880400	Weak transcription	Ovary	ovary
4	chr13:95856400-95898200	Weak transcription	NHEK	skin
5	chr13:95858600-95880400	Weak transcription	Fetal Thymus	thymus
6	chr13:95859000-95874800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr13:95859000-95878800	Weak transcription	Esophagus	oesophagus
8	chr13:95859000-95879000	Weak transcription	Gastric	stomach
9	chr13:95859000-95885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:95859000-95887800	Weak transcription	HSMM	muscle
11	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
12	chr13:95859200-95880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
14	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:95860600-95878000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr13:95860600-95879000	Weak transcription	Fetal Stomach	stomach
17	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:95861800-95899000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:95862000-95898200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:95862200-95898200	Weak transcription	HSMMtube	muscle
21	chr13:95862400-95879000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:95862600-95874600	Weak transcription	Fetal Intestine Large	intestine
23	chr13:95862800-95878000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:95863000-95878200	Weak transcription	Fetal Intestine Small	intestine
25	chr13:95863000-95898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:95863200-95883400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:95863200-95895400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:95865800-95878800	Weak transcription	Left Ventricle	heart
29	chr13:95866000-95874200	Weak transcription	Small Intestine	intestine
30	chr13:95866000-95874400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:95866000-95874400	Weak transcription	NHLF	lung
32	chr13:95866000-95874600	Weak transcription	Spleen	Spleen
33	chr13:95866200-95874200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr13:95866200-95874400	Weak transcription	K562	blood
35	chr13:95866200-95878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:95866200-95887600	Weak transcription	HUVEC	blood vessel
37	chr13:95866200-95897400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr13:95866200-95897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr13:95870000-95874200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:95870600-95874400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr13:95870800-95874200	Weak transcription	Stomach Mucosa	stomach
42	chr13:95871000-95874400	Weak transcription	A549	lung
43	chr13:95871600-95874800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr13:95872000-95874000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:95872000-95874200	Weak transcription	Lung	lung
46	chr13:95872000-95876400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:95872000-95878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:95872000-95897600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:95872200-95874200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr13:95872200-95874400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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