Variant report

Variant	rs9303006
Chromosome Location	chr17:66977268-66977269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11453	0.84[EUR][1000 genomes]
rs1541470	0.83[EUR][1000 genomes]
rs2191213	0.84[EUR][1000 genomes]
rs2302292	0.82[EUR][1000 genomes]
rs2302293	0.82[EUR][1000 genomes]
rs4968828	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4968983	0.83[EUR][1000 genomes]
rs6501944	0.88[EUR][1000 genomes]
rs9894490	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908700	chr17:66885526-66985992	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv908701	chr17:66888346-66978319	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1849165	chr17:66899261-66978319	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv908703	chr17:66904001-66978319	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66965600-66977600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:66965600-66980200	Weak transcription	Brain Anterior Caudate	brain
3	chr17:66965600-66986000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:66969200-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr17:66970800-66984000	Weak transcription	Spleen	Spleen
6	chr17:66971000-66987800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:66972400-66977400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr17:66972600-66981600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr17:66972800-66977400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr17:66973600-66980000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr17:66974000-66977400	Weak transcription	Liver	Liver
12	chr17:66974000-66977600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr17:66977000-66978200	Enhancers	HUVEC	blood vessel
14	chr17:66977200-66977400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:66977200-66977400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr17:66977200-66977400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:66977200-66977400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr17:66977200-66977400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr17:66977200-66977400	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr17:66977200-66977400	Enhancers	Duodenum Mucosa	Duodenum
21	chr17:66977200-66977400	Enhancers	Pancreas	Pancrea
22	chr17:66977200-66977400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr17:66977200-66977400	Enhancers	GM12878-XiMat	blood
24	chr17:66977200-66977600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr17:66977200-66977600	Enhancers	Fetal Lung	lung
26	chr17:66977200-66977800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr17:66977200-66977800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:66977200-66977800	Enhancers	Brain Substantia Nigra	brain
29	chr17:66977200-66977800	Enhancers	Fetal Muscle Leg	muscle
30	chr17:66977200-66977800	Enhancers	Right Atrium	heart
31	chr17:66977200-66977800	Enhancers	Stomach Mucosa	stomach
32	chr17:66977200-66977800	Enhancers	Hela-S3	cervix
33	chr17:66977200-66977800	Enhancers	HepG2	liver
34	chr17:66977200-66977800	Active TSS	Osteobl	bone
35	chr17:66977200-66978000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr17:66977200-66978000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr17:66977200-66978600	Enhancers	NHDF-Ad	bronchial
38	chr17:66977200-66982800	Strong transcription	Ovary	ovary

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