Variant report

Variant	rs9303007
Chromosome Location	chr17:66986703-66986704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1541469	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1971017	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1984722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2109227	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58844770	0.85[EUR][1000 genomes]
rs7221250	0.82[AMR][1000 genomes]
rs8066118	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66971000-66987800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:66977400-66989400	Weak transcription	Pancreas	Pancrea
3	chr17:66977600-67001400	Weak transcription	Fetal Lung	lung
4	chr17:66977800-66987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:66977800-66991000	Weak transcription	Fetal Stomach	stomach
6	chr17:66977800-66991600	Strong transcription	Adipose Nuclei	Adipose
7	chr17:66977800-67027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:66978600-66987200	Weak transcription	NHDF-Ad	bronchial
9	chr17:66978600-66988000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:66978600-66989400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:66979400-67005400	Weak transcription	Psoas Muscle	Psoas
12	chr17:66979600-67001200	Weak transcription	Left Ventricle	heart
13	chr17:66980400-67009400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr17:66981400-67001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr17:66981400-67001400	Weak transcription	Fetal Muscle Leg	muscle
16	chr17:66982600-66990000	Strong transcription	Liver	Liver
17	chr17:66983600-66988000	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr17:66985400-66988200	Strong transcription	Ovary	ovary
19	chr17:66985600-66988000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr17:66986000-66987400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr17:66986400-66986800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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