Variant report
| Variant | rs9305547 |
|---|---|
| Chromosome Location | chr21:16474020-16474021 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16472331..16474791-chr21:16561734..16563675,2 | MCF-7 | breast: | |
| 2 | chr21:16467939..16472063-chr21:16472066..16474112,3 | MCF-7 | breast: | |
| 3 | chr21:16473730..16476676-chr21:16570598..16572953,2 | MCF-7 | breast: | |
| 4 | chr21:16436899..16439316-chr21:16473688..16477461,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs2823055 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28601744 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9808701 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9808704 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834048 | chr21:16324481-16489570 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9305547 | APOBEC3B | trans | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
