Variant report

Variant	rs9306273
Chromosome Location	chr22:33463036-33463037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1547420	0.80[ASN][1000 genomes]
rs1981469	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4499532	0.85[ASN][1000 genomes]
rs57330381	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5749552	0.85[EUR][1000 genomes]
rs5754399	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs5754403	0.85[ASN][1000 genomes]
rs5998714	0.83[YRI][hapmap]
rs8142672	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs929040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621630	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9621631	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	esv2762120	chr22:33458712-33470321	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv528534	chr22:33459131-33469031	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33454800-33465000	Weak transcription	Fetal Brain Female	brain
2	chr22:33462400-33463200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr22:33462400-33463200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33462600-33463200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr22:33462600-33463200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr22:33462800-33463200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr22:33462800-33463200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr22:33462800-33463200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr22:33462800-33463200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr22:33462800-33463200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr22:33463000-33464800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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