Variant report

Variant	rs9307036
Chromosome Location	chr4:88382475-88382476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88380058..88382518-chr4:88388082..88389915,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10008963	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10009776	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10015443	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10017282	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10034240	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10213468	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11097151	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13119798	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13122902	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28439403	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4388049	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6531987	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6531988	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6531994	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6531995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6531997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67796586	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6816136	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827817	0.80[MEX][hapmap]
rs6847168	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7666886	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7673045	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7695235	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9968511	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1011882	chr4:88363959-88402477	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
4	chr4:88346200-88382600	Weak transcription	NHLF	lung
5	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
6	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
7	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:88361200-88383000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:88364800-88382800	Weak transcription	HMEC	breast
10	chr4:88365000-88403400	Weak transcription	Right Ventricle	heart
11	chr4:88372600-88382600	Weak transcription	NHEK	skin
12	chr4:88372600-88398800	Weak transcription	Lung	lung
13	chr4:88372800-88386400	Weak transcription	HSMM	muscle
14	chr4:88372800-88398800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:88373800-88386200	Weak transcription	HSMMtube	muscle
16	chr4:88373800-88397000	Weak transcription	Aorta	Aorta
17	chr4:88373800-88397200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:88373800-88397600	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:88373800-88409800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:88374000-88441000	Weak transcription	Spleen	Spleen
21	chr4:88375800-88409400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:88376200-88398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:88378000-88410400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:88379200-88394600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:88379400-88387200	Weak transcription	Placenta	Placenta
26	chr4:88379400-88393800	Weak transcription	Left Ventricle	heart
27	chr4:88379600-88398200	Weak transcription	Fetal Stomach	stomach
28	chr4:88379600-88409400	Weak transcription	Fetal Intestine Small	intestine
29	chr4:88379800-88396000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:88380200-88382800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:88380200-88386400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:88380200-88386800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:88380400-88382800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:88380400-88383000	Weak transcription	Primary B cells from cord blood	blood
35	chr4:88380400-88383200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:88380400-88386800	Weak transcription	Fetal Kidney	kidney
37	chr4:88380400-88388800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:88380400-88388800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr4:88380400-88394200	Weak transcription	Fetal Lung	lung
40	chr4:88380400-88394400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:88380400-88397000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:88380400-88397600	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:88380400-88398800	Weak transcription	Brain Substantia Nigra	brain
44	chr4:88380400-88402400	Weak transcription	Liver	Liver
45	chr4:88380400-88410000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:88380400-88419600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:88380600-88382600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr4:88380600-88383000	Weak transcription	NH-A	brain
49	chr4:88380600-88385800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:88380600-88387800	Weak transcription	Pancreas	Pancrea

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