Variant report

Variant	rs9308395
Chromosome Location	chr1:221690855-221690856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10863630	0.98[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11118744	0.82[ASN][1000 genomes]
rs12074359	0.82[ASN][1000 genomes]
rs1380252	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1380255	0.88[ASN][1000 genomes]
rs1599087	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4846718	0.82[ASN][1000 genomes]
rs61600912	0.81[ASN][1000 genomes]
rs969024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9725646	0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.82[ASN][1000 genomes]
rs9726206	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9726287	0.82[ASN][1000 genomes]
rs9727778	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9729477	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9730022	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9308395	IARS2	cis	parietal	SCAN
rs9308395	DUSP10	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221688400-221691000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221688600-221691200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:221690800-221694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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