Variant report

Variant	rs9309783
Chromosome Location	chr3:77950946-77950947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11127605	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11127608	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11926162	0.95[CEU][hapmap]
rs11926222	0.95[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs12495475	0.89[EUR][1000 genomes]
rs12631844	0.93[EUR][1000 genomes]
rs12632301	0.91[EUR][1000 genomes]
rs12633571	0.89[EUR][1000 genomes]
rs12633742	0.91[EUR][1000 genomes]
rs12634959	0.89[EUR][1000 genomes]
rs12637291	0.89[EUR][1000 genomes]
rs12639158	0.91[EUR][1000 genomes]
rs1437528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1550220	0.91[EUR][1000 genomes]
rs17015527	0.88[EUR][1000 genomes]
rs2078269	0.89[EUR][1000 genomes]
rs2313230	0.93[EUR][1000 genomes]
rs3844277	0.89[EUR][1000 genomes]
rs4680935	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55952852	0.91[EUR][1000 genomes]
rs56277020	0.92[EUR][1000 genomes]
rs59586043	0.91[EUR][1000 genomes]
rs60670052	0.93[EUR][1000 genomes]
rs6809636	0.91[EUR][1000 genomes]
rs7629921	0.93[EUR][1000 genomes]
rs7644224	0.89[EUR][1000 genomes]
rs7649888	0.91[EUR][1000 genomes]
rs7650198	0.91[EUR][1000 genomes]
rs9877934	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000873	chr3:77797610-77960031	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834741	chr3:77850810-77989684	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877017	chr3:77881397-78670654	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1008290	chr3:77895292-78308583	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv536595	chr3:77895292-78308583	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1827900	chr3:77950703-78231381	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:77947600-77955000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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