Variant report

Variant	rs9310169
Chromosome Location	chr3:69696906-69696907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69694033..69698273-chr3:69701406..69703258,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1016769	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11128135	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128136	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11707526	0.86[ASN][1000 genomes]
rs11717428	0.98[ASN][1000 genomes]
rs1427416	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1427436	0.80[ASN][1000 genomes]
rs17006251	0.84[ASN][1000 genomes]
rs17006302	0.88[ASN][1000 genomes]
rs17043830	0.98[ASN][1000 genomes]
rs17635394	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17686109	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17686341	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1896301	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28669920	0.82[AFR][1000 genomes]
rs4591509	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62252960	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62252961	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62252962	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62252963	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62252964	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62252965	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62252966	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7611113	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7613802	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7616073	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619198	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7647857	0.98[ASN][1000 genomes]
rs9310167	0.80[AFR][1000 genomes]
rs9310168	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310170	0.82[AFR][1000 genomes]
rs9829925	0.80[AFR][1000 genomes]
rs9829928	0.80[AFR][1000 genomes]
rs9846358	0.80[AFR][1000 genomes]
rs9854296	0.82[AFR][1000 genomes]
rs9870280	0.82[AFR][1000 genomes]
rs9875933	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015103	chr3:69619879-69712504	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69687200-69698600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:69696000-69698200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:69696000-69699000	Enhancers	HSMM	muscle
4	chr3:69696200-69698200	Weak transcription	Right Atrium	heart
5	chr3:69696200-69714400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:69696600-69698200	Enhancers	Fetal Heart	heart
7	chr3:69696800-69697200	Enhancers	Fetal Lung	lung
8	chr3:69696800-69699000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:69696800-69699200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:69696800-69699200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:69696800-69699200	Enhancers	HSMMtube	muscle
12	chr3:69696800-69699400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:69696800-69700000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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