Variant report

Variant	rs9310725
Chromosome Location	chr3:24031090-24031091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24025902..24028777-chr3:24030624..24032378,2	K562	blood:
2	chr3:24030711..24032570-chr3:24036287..24038939,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11717862	0.85[EUR][1000 genomes]
rs13095392	0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs4131403	0.83[EUR][1000 genomes]
rs4241517	0.86[CHB][hapmap];0.87[TSI][hapmap]
rs4241520	0.82[EUR][1000 genomes]
rs4321479	0.86[CHB][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs4589882	0.89[ASW][hapmap];0.81[CHB][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs4619734	0.83[EUR][1000 genomes]
rs4858094	0.84[TSI][hapmap]
rs4858095	0.80[CHB][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs4858098	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4858553	0.84[TSI][hapmap]
rs4858567	0.89[ASW][hapmap];0.86[CHB][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5023610	0.86[CHB][hapmap]
rs6419846	0.86[EUR][1000 genomes]
rs6550823	0.89[ASW][hapmap];0.81[CHB][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs6550824	0.86[EUR][1000 genomes]
rs6550827	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6550828	0.92[GIH][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs6550829	0.85[CHB][hapmap];0.92[GIH][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6778783	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779476	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs6790557	0.83[EUR][1000 genomes]
rs6793391	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6794922	0.89[ASW][hapmap];0.86[CHB][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs6807856	0.81[MKK][hapmap];0.82[TSI][hapmap]
rs7371944	0.89[ASW][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs7431301	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7636810	0.82[CHB][hapmap];0.83[TSI][hapmap]
rs9845287	0.84[TSI][hapmap]
rs9879378	0.89[ASN][1000 genomes]
rs9882735	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:24005600-24032800	Weak transcription	NH-A	brain
3	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:24018400-24032200	Weak transcription	Fetal Brain Female	brain
5	chr3:24018400-24032400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:24019400-24032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:24019400-24032800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:24019400-24032800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:24019400-24032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:24019400-24033200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:24019400-24035400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:24019600-24040800	Weak transcription	NHLF	lung
13	chr3:24020200-24032800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:24021400-24032600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:24021400-24032800	Weak transcription	Fetal Heart	heart
16	chr3:24021600-24033200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:24021800-24033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:24021800-24033400	Weak transcription	NHDF-Ad	bronchial
19	chr3:24023200-24035000	Weak transcription	Right Atrium	heart
20	chr3:24023200-24035200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:24023400-24032200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:24023400-24033200	Weak transcription	Adipose Nuclei	Adipose
23	chr3:24023600-24033400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:24024000-24033200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:24024000-24035200	Weak transcription	Left Ventricle	heart
26	chr3:24024200-24032200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:24024400-24032200	Weak transcription	Brain Substantia Nigra	brain
28	chr3:24025400-24033000	Weak transcription	Primary B cells from cord blood	blood
29	chr3:24029000-24032000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:24029000-24032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:24029000-24035000	Weak transcription	Lung	lung
32	chr3:24029200-24031200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:24029200-24032000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:24029200-24032600	Weak transcription	HUVEC	blood vessel
35	chr3:24029800-24033200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr3:24030600-24032000	Weak transcription	Fetal Brain Male	brain
37	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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