Variant report

Variant	rs9311406
Chromosome Location	chr3:47352552-47352553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47314259..47316473-chr3:47352261..47355083,2	K562	blood:
2	chr3:47322933..47324712-chr3:47351981..47353928,2	K562	blood:
3	chr3:47346723..47349311-chr3:47352189..47354716,2	K562	blood:
4	chr3:47346467..47349928-chr3:47352016..47354716,3	K562	blood:
5	chr3:47293290..47295521-chr3:47352097..47355048,2	K562	blood:
6	chr3:47351807..47354285-chr3:47356422..47359102,3	K562	blood:

Variant related genes	Relation type
ENSG00000088727	Chromatin interaction
ENSG00000114648	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9823599	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47325400-47361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:47325600-47367600	Weak transcription	A549	lung
3	chr3:47326200-47356200	Weak transcription	Fetal Heart	heart
4	chr3:47326200-47356600	Weak transcription	NHDF-Ad	bronchial
5	chr3:47326200-47359600	Weak transcription	Fetal Lung	lung
6	chr3:47326200-47362200	Weak transcription	Gastric	stomach
7	chr3:47326200-47363200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:47326400-47364400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:47326800-47356600	Weak transcription	Small Intestine	intestine
10	chr3:47328400-47364400	Weak transcription	Pancreas	Pancrea
11	chr3:47329200-47359800	Weak transcription	NHLF	lung
12	chr3:47330400-47356000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:47330600-47359800	Weak transcription	Hela-S3	cervix
14	chr3:47330600-47360600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:47330800-47356600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:47330800-47361800	Weak transcription	HMEC	breast
17	chr3:47332200-47361800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:47332400-47355600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:47332600-47361000	Weak transcription	Esophagus	oesophagus
20	chr3:47332800-47361000	Weak transcription	Aorta	Aorta
21	chr3:47333000-47356400	Weak transcription	Osteobl	bone
22	chr3:47333200-47364800	Weak transcription	NH-A	brain
23	chr3:47333800-47371400	Weak transcription	Psoas Muscle	Psoas
24	chr3:47336400-47360200	Weak transcription	Thymus	Thymus
25	chr3:47337000-47356600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:47337000-47361000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:47338400-47361200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:47338600-47355600	Weak transcription	Left Ventricle	heart
29	chr3:47338600-47361200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:47338600-47369800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:47338600-47371200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:47338800-47356200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:47338800-47360200	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:47339000-47356200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:47339000-47359400	Weak transcription	Spleen	Spleen
36	chr3:47339000-47361800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:47341600-47360000	Weak transcription	Fetal Intestine Large	intestine
38	chr3:47343200-47362000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:47343800-47354800	Weak transcription	HepG2	liver
40	chr3:47344200-47355200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:47344200-47356400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:47344400-47356200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:47344400-47356200	Weak transcription	HUVEC	blood vessel
44	chr3:47344400-47362200	Weak transcription	Brain Germinal Matrix	brain
45	chr3:47344600-47356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:47344800-47356200	Weak transcription	Liver	Liver
47	chr3:47344800-47359800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:47344800-47360200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:47344800-47360400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:47344800-47361200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links