Variant report

Variant	rs9311747
Chromosome Location	chr3:60061513-60061514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10510827	0.82[JPT][hapmap]
rs13099584	1.00[JPT][hapmap]
rs13321394	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13324099	0.96[AFR][1000 genomes]
rs17062206	0.82[JPT][hapmap]
rs2630173	0.82[JPT][hapmap]
rs2630181	0.82[JPT][hapmap]
rs2630184	0.82[JPT][hapmap]
rs2630196	0.82[JPT][hapmap]
rs2630197	0.82[JPT][hapmap]
rs2630200	0.82[JPT][hapmap]
rs2736812	0.82[JPT][hapmap]
rs59085701	0.81[ASN][1000 genomes]
rs6788803	0.82[JPT][hapmap]
rs72880845	0.81[AFR][1000 genomes]
rs7634772	1.00[JPT][hapmap]
rs969561	0.82[JPT][hapmap]
rs9818696	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9819602	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820238	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9823026	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9829623	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9860502	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9874674	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520108	chr3:60059041-60062939	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv523496	chr3:60059041-60064296	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60051600-60062000	Weak transcription	Aorta	Aorta
2	chr3:60051800-60063000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60058400-60061800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:60059400-60061600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr3:60059400-60061800	Enhancers	Fetal Thymus	thymus
6	chr3:60059400-60062200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr3:60059800-60061800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:60059800-60064800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:60060200-60062000	Enhancers	Thymus	Thymus
10	chr3:60060800-60061600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:60061000-60061800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:60061000-60064000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr3:60061200-60061600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:60061200-60061800	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:60061200-60061800	Transcr. at gene 5' and 3'	Dnd41	blood
16	chr3:60061400-60061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:60061400-60061800	Enhancers	Brain Substantia Nigra	brain
18	chr3:60061400-60061800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr3:60061400-60062400	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr3:60061400-60062800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:60061400-60063400	Flanking Active TSS	Primary T cells from cord blood	blood

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