Variant report

Variant	rs9312922
Chromosome Location	chr5:16553783-16553784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16551810..16554386-chr5:16638970..16640642,2	MCF-7	breast:
2	chr5:16464191..16467356-chr5:16550758..16555048,4	MCF-7	breast:
3	chr5:16464664..16468967-chr5:16550609..16554281,4	MCF-7	breast:
4	chr5:16505222..16507536-chr5:16551876..16554490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173545	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035580	0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs10041159	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10053746	0.87[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10073468	0.98[ASN][1000 genomes]
rs10454940	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs12187057	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs12187879	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1551050	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs17706853	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2028843	0.88[JPT][hapmap]
rs2162770	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2560828	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2617426	0.83[YRI][hapmap]
rs56379171	0.98[ASN][1000 genomes]
rs6860945	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs6862083	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6882868	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs6886993	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7705650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730689	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9312921	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16539200-16554400	Weak transcription	Small Intestine	intestine
3	chr5:16542600-16567200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr5:16543200-16591600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:16543600-16589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:16544000-16562400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:16544200-16565200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:16545000-16574600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:16546200-16559400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:16549200-16554400	Weak transcription	Fetal Intestine Large	intestine
11	chr5:16549200-16569000	Weak transcription	Left Ventricle	heart
12	chr5:16549200-16580200	Weak transcription	Gastric	stomach
13	chr5:16550400-16556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:16550400-16557400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:16550800-16554200	Weak transcription	Pancreas	Pancrea
16	chr5:16550800-16555400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:16551800-16553800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:16552200-16554400	Enhancers	Brain Anterior Caudate	brain
19	chr5:16552400-16559200	Weak transcription	Primary T cells from cord blood	blood
20	chr5:16553000-16568600	Weak transcription	NHDF-Ad	bronchial
21	chr5:16553000-16573400	Weak transcription	Fetal Intestine Small	intestine
22	chr5:16553200-16556800	Weak transcription	Brain Angular Gyrus	brain
23	chr5:16553200-16557200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:16553200-16562000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:16553200-16564600	Weak transcription	Psoas Muscle	Psoas
26	chr5:16553200-16564600	Weak transcription	Thymus	Thymus
27	chr5:16553400-16556000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:16553400-16556600	Weak transcription	Brain Substantia Nigra	brain
29	chr5:16553400-16556800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr5:16553400-16558200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:16553400-16559200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr5:16553400-16559600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:16553400-16564200	Weak transcription	Fetal Heart	heart
34	chr5:16553400-16569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr5:16553400-16572800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:16553600-16554000	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:16553600-16554000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr5:16553600-16559200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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