Variant report

Variant	rs9314177
Chromosome Location	chr5:96028860-96028861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs149313	0.80[ASN][1000 genomes]
rs149319	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs151828	0.80[ASN][1000 genomes]
rs151829	0.82[ASN][1000 genomes]
rs26515	0.97[ASN][1000 genomes]
rs27852	0.93[ASN][1000 genomes]
rs6556938	0.81[ASN][1000 genomes]
rs697976	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95999400-96038000	Weak transcription	Fetal Stomach	stomach
2	chr5:95999600-96037800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:95999600-96038000	Weak transcription	Fetal Lung	lung
4	chr5:96000800-96037600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:96001600-96037000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:96002400-96037600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:96002400-96038200	Weak transcription	Esophagus	oesophagus
8	chr5:96004800-96036600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:96005000-96038000	Weak transcription	Ovary	ovary
10	chr5:96005000-96038200	Weak transcription	Gastric	stomach
11	chr5:96009200-96037600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:96013000-96037800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:96013600-96031400	Weak transcription	Stomach Mucosa	stomach
14	chr5:96013800-96037600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:96014000-96030800	Weak transcription	HSMM	muscle
16	chr5:96015400-96031800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:96016200-96031600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:96016600-96035200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:96016800-96035000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:96016800-96038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:96017000-96034000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:96017000-96038000	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:96018800-96038200	Weak transcription	Colonic Mucosa	Colon
24	chr5:96018800-96038200	Weak transcription	Spleen	Spleen
25	chr5:96019000-96031600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:96019400-96031600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:96021800-96032000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:96022200-96031600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr5:96022200-96034800	Weak transcription	NH-A	brain
30	chr5:96022400-96031600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:96023000-96030400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr5:96023000-96035000	Weak transcription	Right Ventricle	heart
33	chr5:96023000-96038400	Weak transcription	Small Intestine	intestine
34	chr5:96023200-96037600	Weak transcription	Thymus	Thymus
35	chr5:96023400-96031200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:96023400-96032000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr5:96023600-96031200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:96023600-96033000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:96023600-96035000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:96023600-96036800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr5:96023800-96037000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr5:96023800-96037600	Weak transcription	Fetal Kidney	kidney
43	chr5:96023800-96038000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:96024000-96038200	Weak transcription	GM12878-XiMat	blood
45	chr5:96024800-96035200	Weak transcription	Brain Angular Gyrus	brain
46	chr5:96025600-96037200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:96025800-96029800	Strong transcription	Primary B cells from cord blood	blood
48	chr5:96026200-96029600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr5:96026200-96037600	Weak transcription	Psoas Muscle	Psoas
50	chr5:96027200-96029200	Strong transcription	Primary B cells from peripheral blood	blood

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