Variant report

Variant	rs9314527
Chromosome Location	chr8:4196796-4196797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089349	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10091558	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs10098869	0.81[CHB][hapmap]
rs10102768	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10104209	0.89[JPT][hapmap]
rs10105465	0.94[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1014760	0.83[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11985125	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1438207	0.83[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs17413882	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1866272	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1875897	0.89[JPT][hapmap]
rs4568637	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62480610	0.89[ASN][1000 genomes]
rs6558863	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6995552	0.88[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7834964	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4190000-4199600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:4194200-4202600	Weak transcription	Pancreas	Pancrea
3	chr8:4194400-4197000	Enhancers	Fetal Intestine Large	intestine
4	chr8:4194600-4197400	Enhancers	Liver	Liver
5	chr8:4194800-4202600	Weak transcription	Gastric	stomach
6	chr8:4195200-4199200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:4195400-4196800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:4196200-4197000	Enhancers	Fetal Intestine Small	intestine
9	chr8:4196400-4196800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr8:4196400-4197600	Enhancers	Stomach Mucosa	stomach
11	chr8:4196400-4198800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links