Variant report

Variant	rs9315457
Chromosome Location	chr13:37538644-37538645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37494193..37496576-chr13:37538034..37540636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120693	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1199975	1.00[EUR][1000 genomes]
rs2997183	1.00[EUR][1000 genomes]
rs586424	1.00[EUR][1000 genomes]
rs6420362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37519600-37561400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:37520600-37560800	Weak transcription	Small Intestine	intestine
3	chr13:37521400-37542800	Weak transcription	A549	lung
4	chr13:37521800-37539200	Weak transcription	K562	blood
5	chr13:37522600-37541000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:37522600-37548800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:37522800-37547000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:37523000-37545600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr13:37523200-37558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:37524000-37563800	Weak transcription	Psoas Muscle	Psoas
11	chr13:37524600-37572400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:37524800-37546400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:37525000-37560800	Weak transcription	Fetal Heart	heart
14	chr13:37525600-37544800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:37526600-37556200	Weak transcription	Brain Angular Gyrus	brain
16	chr13:37526800-37559400	Weak transcription	Hela-S3	cervix
17	chr13:37528600-37541800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:37528800-37539800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:37528800-37546200	Strong transcription	Fetal Thymus	thymus
20	chr13:37529400-37546800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr13:37529400-37558200	Weak transcription	Gastric	stomach
22	chr13:37529600-37555600	Weak transcription	Stomach Mucosa	stomach
23	chr13:37530600-37545600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr13:37531800-37539600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:37531800-37540800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:37531800-37541600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr13:37531800-37570000	Strong transcription	Dnd41	blood
28	chr13:37532000-37546000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr13:37532400-37545800	Strong transcription	Liver	Liver
30	chr13:37532400-37546200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr13:37532800-37540400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr13:37533000-37546400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:37533400-37543400	Strong transcription	Primary B cells from cord blood	blood
34	chr13:37533400-37545400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:37533400-37546200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr13:37533600-37539600	Strong transcription	HSMM	muscle
37	chr13:37534000-37545600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr13:37534400-37539600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:37534600-37540400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr13:37534600-37541000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr13:37534600-37541000	Strong transcription	Fetal Stomach	stomach
42	chr13:37534600-37541200	Strong transcription	Fetal Muscle Leg	muscle
43	chr13:37534600-37541400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr13:37534800-37539200	Strong transcription	HUVEC	blood vessel
45	chr13:37534800-37541800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:37534800-37543400	Strong transcription	Fetal Intestine Large	intestine
47	chr13:37534800-37546000	Strong transcription	Placenta	Placenta
48	chr13:37535000-37539600	Strong transcription	NHDF-Ad	bronchial
49	chr13:37535000-37539800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr13:37535000-37545800	Strong transcription	Adipose Nuclei	Adipose

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