Variant report

Variant	rs931555
Chromosome Location	chr5:35803577-35803578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35797431..35799270-chr5:35801960..35804171,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10075764	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12697352	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13436926	0.85[ASN][1000 genomes]
rs1993879	1.00[LWK][hapmap]
rs4869426	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Multiple sclerosis	21244703	GWAS catalog

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs931555	C5orf33	cis	cerebellum	SCAN
rs931555	DNAJC21	cis	cerebellum	SCAN
rs931555	TOMM7	cis	cerebellum	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35797800-35804200	Weak transcription	Pancreas	Pancrea
2	chr5:35801800-35807800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35802000-35804800	Enhancers	Fetal Thymus	thymus
4	chr5:35802000-35805200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35802200-35804800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr5:35802200-35807800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:35802200-35808400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:35802400-35804600	Enhancers	Thymus	Thymus
9	chr5:35802400-35805800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:35802400-35807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr5:35802600-35805400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:35802600-35805600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:35802800-35803600	Enhancers	Osteobl	bone
14	chr5:35802800-35804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:35802800-35804000	Enhancers	HUVEC	blood vessel
16	chr5:35802800-35804400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:35802800-35804400	Enhancers	Lung	lung
18	chr5:35802800-35804600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:35802800-35804600	Enhancers	Fetal Brain Male	brain
20	chr5:35802800-35804600	Enhancers	Fetal Brain Female	brain
21	chr5:35802800-35804600	Enhancers	Fetal Lung	lung
22	chr5:35802800-35804800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:35802800-35804800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr5:35802800-35804800	Enhancers	Dnd41	blood
25	chr5:35802800-35805000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:35802800-35805200	Enhancers	Brain Angular Gyrus	brain
27	chr5:35802800-35805600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr5:35803000-35803800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:35803000-35803800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:35803000-35803800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr5:35803000-35803800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:35803000-35803800	Enhancers	Liver	Liver
33	chr5:35803000-35803800	Enhancers	Left Ventricle	heart
34	chr5:35803000-35803800	Enhancers	Right Ventricle	heart
35	chr5:35803000-35803800	Enhancers	NHLF	lung
36	chr5:35803000-35804000	Enhancers	Fetal Stomach	stomach
37	chr5:35803000-35804000	Enhancers	NHDF-Ad	bronchial
38	chr5:35803000-35804200	Enhancers	Duodenum Mucosa	Duodenum
39	chr5:35803000-35804200	Enhancers	Fetal Muscle Leg	muscle
40	chr5:35803000-35804600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:35803000-35805200	Enhancers	Brain Substantia Nigra	brain
42	chr5:35803000-35805800	Enhancers	Brain Germinal Matrix	brain
43	chr5:35803200-35803600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:35803200-35803600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr5:35803200-35803600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:35803200-35803600	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr5:35803200-35803600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr5:35803200-35803600	Enhancers	Fetal Muscle Trunk	muscle
49	chr5:35803200-35803600	Enhancers	Ovary	ovary
50	chr5:35803200-35803600	Enhancers	Skeletal Muscle Male	skeletal muscle

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