Variant report

Variant	rs9315559
Chromosome Location	chr13:38784388-38784389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1011484	1.00[CHB][hapmap]
rs10507469	1.00[CHB][hapmap]
rs10507470	1.00[CHB][hapmap]
rs1330972	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330973	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057355	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17057380	1.00[ASN][1000 genomes]
rs1979865	0.81[EUR][1000 genomes]
rs1979866	0.82[EUR][1000 genomes]
rs2001430	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019516	1.00[CHB][hapmap]
rs2134209	1.00[ASN][1000 genomes]
rs2173952	1.00[ASN][1000 genomes]
rs2202121	1.00[ASN][1000 genomes]
rs2460319	1.00[ASN][1000 genomes]
rs2460324	1.00[ASN][1000 genomes]
rs2485779	1.00[CHB][hapmap]
rs3903006	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4054427	1.00[ASN][1000 genomes]
rs4054430	1.00[ASN][1000 genomes]
rs4383021	1.00[ASN][1000 genomes]
rs4418934	1.00[ASN][1000 genomes]
rs4436666	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4453349	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4466961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473056	1.00[ASN][1000 genomes]
rs4520716	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4534702	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4547225	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4592525	1.00[ASN][1000 genomes]
rs4594119	1.00[ASN][1000 genomes]
rs4614591	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs486259	1.00[ASN][1000 genomes]
rs528967	1.00[ASN][1000 genomes]
rs604312	1.00[ASN][1000 genomes]
rs605680	1.00[ASN][1000 genomes]
rs619090	1.00[ASN][1000 genomes]
rs660187	1.00[ASN][1000 genomes]
rs7325481	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73456013	1.00[ASN][1000 genomes]
rs73456059	1.00[ASN][1000 genomes]
rs73456084	1.00[ASN][1000 genomes]
rs7997362	1.00[ASN][1000 genomes]
rs7997942	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7999258	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9315560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315563	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315566	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315567	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532186	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548242	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548246	0.81[AMR][1000 genomes]
rs9548253	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566318	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576478	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576484	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9576485	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9576495	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971225	1.00[ASN][1000 genomes]
rs9888482	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38777600-38787200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38784000-38785000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:38784000-38785000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:38784000-38786000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:38784200-38785000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links