Variant report

Variant	rs9315709
Chromosome Location	chr13:40152988-40152989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2324342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324343	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324344	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324345	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4142372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567589	0.92[EUR][1000 genomes]
rs5010893	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7333587	0.85[AMR][1000 genomes]
rs9315705	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9548835	0.92[EUR][1000 genomes]
rs9566457	0.86[AMR][1000 genomes]
rs9566462	0.88[EUR][1000 genomes]
rs9576869	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40139200-40158000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:40140000-40169400	Weak transcription	Fetal Stomach	stomach
3	chr13:40140400-40157800	Weak transcription	Adipose Nuclei	Adipose
4	chr13:40140800-40165400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:40142000-40156200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:40142000-40156200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:40142000-40169400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:40142000-40169400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:40143000-40158200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:40143200-40157800	Weak transcription	NHDF-Ad	bronchial
11	chr13:40143200-40161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:40143200-40170800	Weak transcription	Osteobl	bone
13	chr13:40145600-40153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:40146000-40155400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:40146000-40171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:40146200-40161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:40146400-40155200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:40147000-40153200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:40147000-40162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:40149200-40153000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:40149800-40153000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:40150000-40172600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr13:40150400-40170600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr13:40150600-40171800	Weak transcription	HSMM	muscle
25	chr13:40151200-40153600	Enhancers	Left Ventricle	heart
26	chr13:40151400-40153600	Enhancers	Fetal Muscle Leg	muscle
27	chr13:40151400-40153600	Enhancers	Right Atrium	heart
28	chr13:40151800-40153000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr13:40151800-40153200	Enhancers	Fetal Lung	lung
30	chr13:40151800-40153600	Enhancers	Psoas Muscle	Psoas
31	chr13:40152200-40153200	Flanking Active TSS	Fetal Heart	heart
32	chr13:40152200-40153400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:40152200-40153600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr13:40152200-40153600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr13:40152200-40153600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr13:40152400-40153600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr13:40152400-40153600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr13:40152600-40153200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr13:40152600-40153400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:40152600-40153400	Enhancers	Right Ventricle	heart
41	chr13:40152600-40153600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr13:40152600-40153600	Enhancers	Ovary	ovary
43	chr13:40152800-40153000	Enhancers	Brain Hippocampus Middle	brain
44	chr13:40152800-40153200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:40152800-40153200	Enhancers	NHLF	lung
46	chr13:40152800-40153400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:40152800-40153400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr13:40152800-40153400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr13:40152800-40153400	Enhancers	Lung	lung
50	chr13:40152800-40153400	Enhancers	Skeletal Muscle Female	skeletal muscle

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