Variant report

Variant	rs9316402
Chromosome Location	chr13:49147204-49147205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49145648..49148059-chr13:49151703..49153220,2	K562	blood:

Variant related genes	Relation type
ENSG00000233610	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12323317	1.00[AFR][1000 genomes]
rs9595982	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv455881	chr13:49134412-49169570	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv561591	chr13:49134412-49169570	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49135000-49155000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:49137200-49153000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr13:49141800-49150200	Weak transcription	Aorta	Aorta
4	chr13:49142400-49148800	Enhancers	Fetal Thymus	thymus
5	chr13:49143000-49153600	Weak transcription	Liver	Liver
6	chr13:49143600-49147800	Enhancers	Fetal Muscle Trunk	muscle
7	chr13:49143600-49148800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:49144000-49147800	Enhancers	Primary hematopoietic stem cells	blood
9	chr13:49144000-49151400	Weak transcription	Lung	lung
10	chr13:49144800-49153000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr13:49145000-49150800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:49145400-49147400	Weak transcription	Esophagus	oesophagus
13	chr13:49145800-49152800	Weak transcription	Placenta	Placenta
14	chr13:49146000-49147400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:49146000-49147400	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:49146000-49147400	Weak transcription	Psoas Muscle	Psoas
17	chr13:49146000-49148200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:49146000-49148200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr13:49146000-49148400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr13:49146000-49148600	Enhancers	Adipose Nuclei	Adipose
21	chr13:49146000-49153200	Weak transcription	Stomach Mucosa	stomach
22	chr13:49146000-49153400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr13:49146000-49153800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:49146200-49147400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr13:49146200-49147400	Enhancers	GM12878-XiMat	blood
26	chr13:49146200-49148600	Weak transcription	HepG2	liver
27	chr13:49146200-49150400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:49146400-49147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:49146400-49147400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:49146400-49147400	Weak transcription	NHDF-Ad	bronchial
31	chr13:49146400-49148400	Weak transcription	Brain Substantia Nigra	brain
32	chr13:49146400-49149400	Enhancers	Dnd41	blood
33	chr13:49146400-49150800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:49146400-49154000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr13:49146600-49148200	Weak transcription	Ovary	ovary
36	chr13:49146600-49148400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr13:49146800-49147400	Weak transcription	Fetal Stomach	stomach
38	chr13:49146800-49148800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr13:49146800-49148800	Enhancers	Right Atrium	heart
40	chr13:49146800-49149400	Enhancers	Left Ventricle	heart
41	chr13:49146800-49157400	Weak transcription	HSMMtube	muscle
42	chr13:49147000-49148400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr13:49147000-49149400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr13:49147000-49150000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr13:49147000-49150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:49147200-49147400	Enhancers	Brain Hippocampus Middle	brain
47	chr13:49147200-49147600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr13:49147200-49147600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:49147200-49147600	Enhancers	Thymus	Thymus
50	chr13:49147200-49147800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links