Variant report

Variant	rs9318346
Chromosome Location	chr13:76006900-76006901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76006248..76008169-chr13:76054948..76056743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136111	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17064426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17064449	1.00[AMR][1000 genomes]
rs73537549	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537555	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75993600-76011200	Weak transcription	Fetal Lung	lung
2	chr13:76000600-76011200	Weak transcription	K562	blood
3	chr13:76001800-76007800	Enhancers	Fetal Heart	heart
4	chr13:76002200-76007800	Enhancers	HepG2	liver
5	chr13:76003200-76007200	Weak transcription	Esophagus	oesophagus
6	chr13:76004000-76007000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:76004200-76007400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr13:76004600-76007400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr13:76005200-76007200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:76005200-76007400	Enhancers	Adipose Nuclei	Adipose
11	chr13:76005200-76014800	Weak transcription	Left Ventricle	heart
12	chr13:76005200-76017200	Weak transcription	Pancreas	Pancrea
13	chr13:76005200-76017600	Weak transcription	Right Atrium	heart
14	chr13:76005800-76007400	Enhancers	NHDF-Ad	bronchial
15	chr13:76006000-76007600	Enhancers	A549	lung
16	chr13:76006200-76007400	Enhancers	Psoas Muscle	Psoas
17	chr13:76006200-76007600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:76006200-76007600	Enhancers	Right Ventricle	heart
19	chr13:76006200-76011600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:76006400-76007400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr13:76006400-76007400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:76006400-76007400	Enhancers	Gastric	stomach
23	chr13:76006400-76007400	Enhancers	NHEK	skin
24	chr13:76006400-76007400	Enhancers	NHLF	lung
25	chr13:76006400-76007600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr13:76006400-76007600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr13:76006600-76007000	Weak transcription	Lung	lung
28	chr13:76006600-76007400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr13:76006800-76007000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr13:76006800-76007000	Weak transcription	HMEC	breast
31	chr13:76006800-76007200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:76006800-76007400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:76006800-76007400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:76006800-76007400	Enhancers	Ovary	ovary
35	chr13:76006800-76007600	Enhancers	Fetal Kidney	kidney
36	chr13:76006800-76007600	Enhancers	Hela-S3	cervix
37	chr13:76006800-76011800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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