Variant report

Variant	rs9320681
Chromosome Location	chr6:119515618-119515619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119506495..119510474-chr6:119512105..119518415,7	K562	blood:
2	chr6:119509157..119512437-chr6:119515182..119517174,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1008471	0.97[AFR][1000 genomes]
rs1008472	0.97[AFR][1000 genomes]
rs1008473	0.97[AFR][1000 genomes]
rs1012510	0.96[AFR][1000 genomes]
rs11153794	0.97[AFR][1000 genomes]
rs11153795	0.97[AFR][1000 genomes]
rs13200504	0.97[AFR][1000 genomes]
rs2072888	0.86[AFR][1000 genomes]
rs2072889	0.97[AFR][1000 genomes]
rs2072890	0.97[AFR][1000 genomes]
rs2072891	0.97[AFR][1000 genomes]
rs2072892	0.97[AFR][1000 genomes]
rs2072893	0.97[AFR][1000 genomes]
rs2142888	0.97[AFR][1000 genomes]
rs2281124	0.97[AFR][1000 genomes]
rs2299872	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299873	0.97[AFR][1000 genomes]
rs2299874	0.97[AFR][1000 genomes]
rs3734384	0.97[AFR][1000 genomes]
rs4946402	0.96[AFR][1000 genomes]
rs4946403	0.97[AFR][1000 genomes]
rs6569055	0.97[AFR][1000 genomes]
rs6917694	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927044	0.97[AFR][1000 genomes]
rs726727	0.86[AFR][1000 genomes]
rs9372524	0.96[AFR][1000 genomes]
rs9387640	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886571	chr6:119494199-119517239	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:119492200-119527800	Weak transcription	NHEK	skin
3	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
4	chr6:119493600-119518000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood
6	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
7	chr6:119494800-119526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:119495400-119522000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:119495600-119522200	Weak transcription	Fetal Kidney	kidney
10	chr6:119497000-119524000	Weak transcription	NHLF	lung
11	chr6:119497000-119524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:119497000-119524400	Weak transcription	Small Intestine	intestine
13	chr6:119497200-119518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
15	chr6:119498200-119527400	Strong transcription	Liver	Liver
16	chr6:119498600-119517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:119498600-119531400	Strong transcription	HepG2	liver
18	chr6:119498800-119526800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:119499000-119517200	Strong transcription	Primary hematopoietic stem cells	blood
20	chr6:119499400-119516200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:119499400-119518200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:119499400-119525400	Weak transcription	NH-A	brain
23	chr6:119499600-119524000	Weak transcription	Brain Anterior Caudate	brain
24	chr6:119499800-119524400	Weak transcription	Right Ventricle	heart
25	chr6:119500800-119515800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:119501200-119522200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:119501600-119518000	Weak transcription	Thymus	Thymus
28	chr6:119501600-119524200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:119502000-119523800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:119502000-119523800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:119502400-119525800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:119502600-119526800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:119503400-119539800	Weak transcription	Gastric	stomach
34	chr6:119503800-119524200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:119504600-119519400	Strong transcription	Adipose Nuclei	Adipose
36	chr6:119505200-119527400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:119505400-119518800	Weak transcription	Brain Substantia Nigra	brain
38	chr6:119505600-119518600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:119505800-119524000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:119506800-119530800	Weak transcription	Stomach Mucosa	stomach
41	chr6:119507800-119525000	Weak transcription	Osteobl	bone
42	chr6:119508000-119516400	Weak transcription	Pancreas	Pancrea
43	chr6:119508000-119524000	Weak transcription	Spleen	Spleen
44	chr6:119508200-119518000	Weak transcription	Aorta	Aorta
45	chr6:119508200-119518200	Weak transcription	Lung	lung
46	chr6:119508200-119522000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:119508200-119523800	Weak transcription	Ovary	ovary
48	chr6:119508200-119524400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:119509200-119516600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:119509200-119518200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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