Variant report

Variant	rs9321309
Chromosome Location	chr6:132047245-132047246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10214690	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3861468	0.86[YRI][hapmap]
rs6931997	0.86[YRI][hapmap]
rs6933299	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483313	0.92[YRI][hapmap]
rs9483314	0.91[YRI][hapmap]
rs9483322	0.92[YRI][hapmap]
rs9493054	0.92[YRI][hapmap]
rs9493084	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:132002600-132054400	Weak transcription	K562	blood
3	chr6:132040200-132047400	Strong transcription	HepG2	liver
4	chr6:132040600-132063200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:132041400-132048600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:132043000-132049800	Weak transcription	Fetal Kidney	kidney
7	chr6:132044000-132047600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:132044200-132055400	Weak transcription	Colonic Mucosa	Colon
9	chr6:132044800-132054400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:132047200-132047800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr6:132047200-132047800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:132047200-132048000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:132047200-132048200	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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