Variant report

Variant	rs9321823
Chromosome Location	chr6:141772163-141772164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10080332	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925056	0.82[AFR][1000 genomes]
rs6930062	0.82[AFR][1000 genomes]
rs7356993	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7739047	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745941	1.00[YRI][hapmap]
rs9321820	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484500	0.82[AFR][1000 genomes]
rs9484509	0.82[AFR][1000 genomes]
rs9484510	1.00[AMR][1000 genomes]
rs9484511	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496010	0.82[AFR][1000 genomes]
rs9496011	0.82[AFR][1000 genomes]
rs9496012	0.82[AFR][1000 genomes]
rs9496024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496031	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141761800-141772600	Weak transcription	Psoas Muscle	Psoas
2	chr6:141764800-141772400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:141765000-141772400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:141767600-141772400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:141767800-141772400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:141771000-141773600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:141771200-141772800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:141771200-141772800	Enhancers	NHDF-Ad	bronchial
9	chr6:141771200-141773000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:141771200-141773000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:141771200-141773400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:141771200-141773600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:141771200-141773800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:141771200-141774000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:141771400-141772400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:141771400-141772400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:141771400-141773400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:141771600-141774200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:141771800-141772600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:141771800-141773600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:141771800-141774000	Enhancers	HUVEC	blood vessel
22	chr6:141772000-141772600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:141772000-141772600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:141772000-141772600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:141772000-141773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:141772000-141774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:141772000-141774000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:141772000-141774000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:141772000-141774000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:141772000-141774000	Enhancers	HMEC	breast
33	chr6:141772000-141774000	Enhancers	HSMM	muscle
34	chr6:141772000-141774000	Enhancers	NH-A	brain
35	chr6:141772000-141774000	Enhancers	NHEK	skin
36	chr6:141772000-141774000	Enhancers	Osteobl	bone

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