Variant report

Variant	rs9323132
Chromosome Location	chr14:47834940-47834941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10131542	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12433443	0.94[EUR][1000 genomes]
rs12436030	0.85[EUR][1000 genomes]
rs12586900	0.83[ASN][1000 genomes]
rs17118298	0.85[EUR][1000 genomes]
rs17118353	0.91[EUR][1000 genomes]
rs17118368	0.93[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17118371	0.93[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs17118372	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs17118397	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17671826	0.85[EUR][1000 genomes]
rs17671953	0.85[EUR][1000 genomes]
rs17672024	0.85[EUR][1000 genomes]
rs17739605	0.85[EUR][1000 genomes]
rs17739629	0.83[EUR][1000 genomes]
rs17739955	0.85[EUR][1000 genomes]
rs17739979	0.85[EUR][1000 genomes]
rs17740878	0.92[EUR][1000 genomes]
rs17740979	0.94[EUR][1000 genomes]
rs2277472	0.94[EUR][1000 genomes]
rs34021479	0.88[ASN][1000 genomes]
rs7154882	0.94[EUR][1000 genomes]
rs7160311	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs72682197	0.80[EUR][1000 genomes]
rs72683803	0.85[EUR][1000 genomes]
rs72683805	0.85[EUR][1000 genomes]
rs72683858	0.94[EUR][1000 genomes]
rs72683876	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040847	chr14:46905206-47869359	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv542085	chr14:46905206-47869359	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1049865	chr14:46905406-47869220	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542087	chr14:46905406-47869220	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1048316	chr14:47297113-47885723	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1046326	chr14:47629646-47845903	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv530661	chr14:47754197-47937396	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1037655	chr14:47827437-47879207	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1053559	chr14:47827437-47880960	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47834000-47835400	Enhancers	Brain Anterior Caudate	brain
2	chr14:47834000-47835400	Enhancers	Brain Hippocampus Middle	brain
3	chr14:47834000-47835600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:47834000-47835600	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:47834200-47835200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:47834200-47835800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:47834200-47835800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:47834200-47835800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:47834200-47835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:47834200-47835800	Enhancers	Brain Substantia Nigra	brain
11	chr14:47834200-47836400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:47834200-47836400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:47834400-47835000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:47834400-47835000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:47834400-47835400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:47834400-47835600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr14:47834600-47835400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:47834600-47835600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr14:47834600-47835800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:47834800-47835800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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