Variant report

Variant	rs9325349
Chromosome Location	chr1:105030864-105030865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12409917	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv872081	chr1:105009637-105455991	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:105030600-105031200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr1:105030600-105031400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr1:105030800-105031000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:105030800-105031000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
5	chr1:105030800-105031000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr1:105030800-105031000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:105030800-105031000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:105030800-105031200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr1:105030800-105031200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr1:105030800-105031200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:105030800-105031200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:105030800-105031400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:105030800-105032000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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