Variant report

Variant	rs9325977
Chromosome Location	chr1:150575647-150575648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6701043	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv535155	chr1:150535349-150582395	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
3	nsv535156	chr1:150540117-150575941	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv535157	chr1:150552692-150575941	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv946384	chr1:150567346-150579087	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553000-150583200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:150553200-150577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:150553200-150581800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:150553200-150581800	Weak transcription	Dnd41	blood
5	chr1:150553200-150583200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
7	chr1:150553800-150576800	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:150554000-150583200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:150555400-150582600	Weak transcription	Primary B cells from cord blood	blood
10	chr1:150560200-150576000	Weak transcription	Ovary	ovary
11	chr1:150561400-150577000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:150561800-150581800	Weak transcription	Brain Substantia Nigra	brain
13	chr1:150562200-150583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:150563000-150583800	Weak transcription	Fetal Lung	lung
15	chr1:150564000-150576200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:150564400-150583800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:150566200-150575800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:150566200-150575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:150566200-150576200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:150566400-150575800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:150566400-150583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:150566600-150577000	Weak transcription	Aorta	Aorta
23	chr1:150566800-150577000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:150568000-150583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:150568600-150576600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:150568600-150576800	Weak transcription	Spleen	Spleen
27	chr1:150568800-150575800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:150568800-150575800	Weak transcription	Pancreas	Pancrea
29	chr1:150568800-150576200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:150568800-150576800	Weak transcription	Adipose Nuclei	Adipose
31	chr1:150569000-150576200	Weak transcription	Osteobl	bone
32	chr1:150569200-150582200	Weak transcription	Brain Anterior Caudate	brain
33	chr1:150569200-150582200	Weak transcription	GM12878-XiMat	blood
34	chr1:150569400-150576800	Weak transcription	Fetal Intestine Large	intestine
35	chr1:150569800-150575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:150569800-150576600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:150569800-150576600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:150570000-150575800	Weak transcription	A549	lung
39	chr1:150570000-150575800	Weak transcription	K562	blood
40	chr1:150570000-150577200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:150570200-150576800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:150570400-150576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:150570400-150582200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:150571000-150575800	Weak transcription	Left Ventricle	heart
45	chr1:150571000-150583800	Weak transcription	Primary T cells from cord blood	blood
46	chr1:150571400-150576800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:150571800-150576000	Strong transcription	Fetal Intestine Small	intestine
48	chr1:150572400-150576400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr1:150572600-150576600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:150572600-150576800	Weak transcription	HSMMtube	muscle

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