Variant report

Variant	rs9327021
Chromosome Location	chr5:116151260-116151261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10038214	0.98[ASN][1000 genomes]
rs10043156	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043756	0.98[ASN][1000 genomes]
rs10056670	0.98[ASN][1000 genomes]
rs10478310	0.98[ASN][1000 genomes]
rs13181946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs17373407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2133759	0.87[ASN][1000 genomes]
rs2133760	0.87[ASN][1000 genomes]
rs2913599	0.86[ASN][1000 genomes]
rs2913600	0.89[ASN][1000 genomes]
rs2913601	0.89[ASN][1000 genomes]
rs2913602	0.87[ASN][1000 genomes]
rs2913603	0.87[ASN][1000 genomes]
rs2937062	0.87[ASN][1000 genomes]
rs2937063	0.87[ASN][1000 genomes]
rs2937066	0.89[ASN][1000 genomes]
rs2937067	0.89[ASN][1000 genomes]
rs2937068	0.85[ASN][1000 genomes]
rs2937069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2937070	0.89[ASN][1000 genomes]
rs2964656	0.85[ASN][1000 genomes]
rs2964669	0.87[ASN][1000 genomes]
rs2964670	0.87[ASN][1000 genomes]
rs2964684	0.89[ASN][1000 genomes]
rs2964692	0.89[ASN][1000 genomes]
rs2964693	0.89[ASN][1000 genomes]
rs34953958	1.00[ASN][1000 genomes]
rs62375232	1.00[ASN][1000 genomes]
rs725151	0.98[ASN][1000 genomes]
rs72819519	1.00[ASN][1000 genomes]
rs7706563	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9885302	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1027701	chr5:116138286-116185586	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116146400-116156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116149200-116152800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:116149400-116153000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:116149600-116152200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:116149800-116154000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:116150000-116152200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:116150200-116152000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:116150200-116152200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:116150200-116152200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:116150200-116152600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:116150200-116153200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:116150600-116151800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:116150800-116151400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:116150800-116151800	Weak transcription	Fetal Brain Female	brain
15	chr5:116150800-116152200	Enhancers	Brain Germinal Matrix	brain
16	chr5:116150800-116152600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:116150800-116153200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:116151000-116156400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:116151000-116157800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:116151000-116158000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:116151200-116152000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:116151200-116152600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:116151200-116152800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:116151200-116156600	Weak transcription	H9 Cell Line	embryonic stem cell

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