Variant report

Variant	rs9327101
Chromosome Location	chr5:118791073-118791074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118788483..118791355-chr5:118802793..118805177,3	K562	blood:

Variant related genes	Relation type
ENSG00000239084	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10067734	0.85[ASN][1000 genomes]
rs10072515	0.89[ASN][1000 genomes]
rs10214151	0.85[ASN][1000 genomes]
rs10478425	0.80[ASN][1000 genomes]
rs11241506	0.81[ASN][1000 genomes]
rs12653056	0.81[ASN][1000 genomes]
rs12656474	0.87[ASN][1000 genomes]
rs12658566	0.82[ASN][1000 genomes]
rs13361193	0.83[ASN][1000 genomes]
rs2075698	0.81[ASN][1000 genomes]
rs34480380	0.81[ASN][1000 genomes]
rs3797360	0.82[ASN][1000 genomes]
rs6894991	0.80[ASN][1000 genomes]
rs6895345	0.80[ASN][1000 genomes]
rs73249951	0.80[ASN][1000 genomes]
rs7721314	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118789000-118791400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:118789000-118795600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:118789000-118805000	Weak transcription	Esophagus	oesophagus
4	chr5:118789000-118805400	Weak transcription	Ovary	ovary
5	chr5:118789000-118805400	Weak transcription	Spleen	Spleen
6	chr5:118789000-118811800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:118789000-118813200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:118789000-118826800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:118789200-118791600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:118789200-118792000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:118789200-118792600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:118789200-118792800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:118789200-118792800	Weak transcription	Right Ventricle	heart
14	chr5:118789200-118793400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:118789200-118794400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:118789200-118797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:118789200-118803800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:118789200-118803800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:118789200-118805000	Weak transcription	Thymus	Thymus
20	chr5:118789200-118805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:118789200-118805600	Weak transcription	Gastric	stomach
22	chr5:118789200-118813200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:118789400-118791400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:118789400-118791600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:118789400-118792200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr5:118789400-118792200	Weak transcription	Primary T cells from cord blood	blood
27	chr5:118789400-118792800	Weak transcription	Placenta	Placenta
28	chr5:118789400-118793000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:118789400-118793000	Weak transcription	HSMM	muscle
30	chr5:118789400-118794400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr5:118789400-118794600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:118789400-118794800	Weak transcription	HUVEC	blood vessel
33	chr5:118789400-118800600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:118789400-118803800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr5:118789400-118805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:118789400-118831200	Weak transcription	NH-A	brain
37	chr5:118789400-118831600	Weak transcription	HSMMtube	muscle
38	chr5:118789600-118792400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:118789600-118794800	Weak transcription	NHEK	skin
40	chr5:118789600-118798400	Weak transcription	Adipose Nuclei	Adipose
41	chr5:118789600-118802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:118789600-118804000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr5:118789600-118810600	Weak transcription	Osteobl	bone
44	chr5:118789600-118812000	Weak transcription	A549	lung
45	chr5:118789600-118813400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:118789600-118813600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:118789800-118791400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:118789800-118792000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:118789800-118792000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:118789800-118792000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links