Variant report

Variant	rs9328010
Chromosome Location	chr5:106924829-106924830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106922846..106925376-chr5:107006745..107008300,2	MCF-7	breast:
2	chr5:106923687..106925505-chr5:106932588..106935068,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs103840	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514540	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12656108	0.81[ASN][1000 genomes]
rs12656960	0.96[ASN][1000 genomes]
rs2005103	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4145099	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs591470	0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs607976	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs641406	0.82[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6596741	0.96[ASN][1000 genomes]
rs6596742	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs685820	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6879546	0.98[ASN][1000 genomes]
rs6888055	0.82[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7734574	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7737882	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs872240	1.00[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9328006	0.84[ASW][hapmap]
rs9686509	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs975690	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106913600-106928800	Weak transcription	Right Ventricle	heart
2	chr5:106914800-106928200	Weak transcription	Left Ventricle	heart
3	chr5:106915200-106929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106915600-106928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106917000-106929200	Weak transcription	HMEC	breast
6	chr5:106917400-106928000	Weak transcription	HSMMtube	muscle
7	chr5:106917600-106928200	Weak transcription	A549	lung
8	chr5:106917800-106928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:106919800-106928200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:106920800-106928400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106923400-106925000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:106923600-106925200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:106923600-106926400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:106923600-106926400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:106924000-106925000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:106924000-106925600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:106924000-106925800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:106924000-106926000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr5:106924000-106926000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:106924000-106926800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:106924000-106928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:106924200-106926000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:106924600-106925000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:106924600-106925600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr5:106924800-106925000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:106924800-106928400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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