Variant report

Variant	rs9328292
Chromosome Location	chr6:5281449-5281450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5280760..5282906-chr6:5284734..5288197,3	K562	blood:
2	chr6:5275045..5278604-chr6:5280944..5282922,3	K562	blood:
3	chr6:5270189..5272095-chr6:5280821..5282645,2	K562	blood:
4	chr6:5260884..5263189-chr6:5279736..5282482,2	K562	blood:

Variant related genes	Relation type
ENSG00000145982	Chromatin interaction
ENSG00000214113	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1411337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1535298	0.90[JPT][hapmap]
rs17139778	0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs17139809	0.83[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17139811	0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17140118	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs17312134	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1884977	0.86[ASN][1000 genomes]
rs1983982	0.82[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs2145373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2208362	0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2326584	0.84[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2746225	0.82[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2746227	0.92[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2746228	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs2753241	0.90[ASN][1000 genomes]
rs2753242	0.90[ASN][1000 genomes]
rs2773288	0.82[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2773292	0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2773297	0.90[ASN][1000 genomes]
rs2773315	0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2773325	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2875979	0.82[YRI][hapmap]
rs2875980	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs384574	0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs409993	0.83[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4141760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs444607	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs446312	0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4499975	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4502984	0.90[ASN][1000 genomes]
rs4530910	0.97[ASN][1000 genomes]
rs4585611	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4607474	0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4610609	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6597125	0.86[JPT][hapmap]
rs67307669	0.81[AFR][1000 genomes]
rs68061889	0.81[AFR][1000 genomes]
rs6906241	0.84[EUR][1000 genomes]
rs6908240	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs72813608	0.90[ASN][1000 genomes]
rs730594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs730595	0.93[ASN][1000 genomes]
rs744405	0.93[ASN][1000 genomes]
rs744756	0.98[ASN][1000 genomes]
rs744757	0.98[ASN][1000 genomes]
rs744758	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756479	0.90[JPT][hapmap]
rs7775335	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9328294	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9405815	0.97[ASN][1000 genomes]
rs9405817	0.97[ASN][1000 genomes]
rs9502285	0.90[ASN][1000 genomes]
rs9504357	0.88[ASN][1000 genomes]
rs9504374	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1030254	chr6:5132261-5431585	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1034463	chr6:5137959-5345678	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1021646	chr6:5157795-5367254	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv538115	chr6:5157795-5367254	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1029609	chr6:5187633-5397254	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1035080	chr6:5206533-5396019	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv538116	chr6:5206533-5396019	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1016456	chr6:5216835-5315913	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv538117	chr6:5216835-5315913	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1028185	chr6:5247624-5340163	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv830578	chr6:5264086-5455570	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	esv275561	chr6:5281294-5285172	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5262400-5287200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5262400-5302400	Weak transcription	Aorta	Aorta
3	chr6:5262600-5287200	Weak transcription	Esophagus	oesophagus
4	chr6:5262600-5287600	Weak transcription	Ovary	ovary
5	chr6:5262800-5287200	Weak transcription	Spleen	Spleen
6	chr6:5262800-5287400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:5263000-5285200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:5263000-5287200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:5263000-5287400	Weak transcription	Fetal Stomach	stomach
10	chr6:5263000-5287800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:5263000-5301000	Weak transcription	Fetal Brain Male	brain
12	chr6:5263200-5287800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:5263400-5287400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:5263400-5287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:5263800-5291800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:5267000-5290400	Weak transcription	HepG2	liver
17	chr6:5268000-5294400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:5273800-5285000	Weak transcription	Lung	lung
19	chr6:5274600-5287200	Weak transcription	Left Ventricle	heart
20	chr6:5274800-5287800	Weak transcription	NHEK	skin
21	chr6:5275000-5281800	Weak transcription	Dnd41	blood
22	chr6:5275000-5282200	Weak transcription	K562	blood
23	chr6:5275000-5290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:5275200-5287400	Weak transcription	Psoas Muscle	Psoas
25	chr6:5275400-5281800	Weak transcription	HSMM	muscle
26	chr6:5275800-5285400	Weak transcription	Gastric	stomach
27	chr6:5276600-5287400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:5276600-5294000	Weak transcription	Fetal Intestine Large	intestine
29	chr6:5277200-5282200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:5277200-5283000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:5277400-5282400	Weak transcription	Pancreas	Pancrea
32	chr6:5277400-5287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:5278600-5287200	Weak transcription	Right Ventricle	heart
34	chr6:5278800-5282000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:5279200-5287400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:5279200-5289800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:5279400-5282000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:5279400-5282000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:5279400-5282000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:5279400-5282200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:5279400-5282200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:5279400-5282200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:5279400-5282400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:5279400-5288200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:5279400-5298200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:5280000-5281600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:5280200-5282000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:5280200-5283400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:5280400-5281800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:5280400-5281800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links