Variant report

Variant	rs9329056
Chromosome Location	chr5:178283910-178283911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:178283861-178283911	HL-60	blood:	n/a
2	chr5:178283861-178283911	NB4	blood:	n/a
3	chr5:178283861-178283911	GM19239	blood:	n/a
4	chr5:178283861-178283911	NHDF-neo	bronchial:	n/a
5	chr5:178283861-178283911	K562	blood:	n/a
6	chr5:178283861-178283911	AG10803	skin:	n/a
7	chr5:178283861-178283911	T-47D	breast:	n/a
8	chr5:178283861-178283911	SKMC	muscle:	n/a
9	chr5:178283861-178283911	Jurkat	blood:	n/a
10	chr5:178283861-178283911	SK-N-MC	brain:	n/a
11	chr5:178283861-178283911	IMR90	lung:	fetal
12	chr5:178283861-178283911	BJ	skin:	n/a
13	chr5:178283861-178283911	Hela-S3	cervix:	n/a
14	chr5:178283861-178283911	MCF10A-Er-Src	breast:	n/a
15	chr5:178283861-178283911	AG09319	gingival:	n/a
16	chr5:178283861-178283911	LNCaP	prostate:	n/a
17	chr5:178283861-178283911	HRPEpiC	eye:	n/a
18	chr5:178283861-178283911	GM12892	blood:	n/a
19	chr5:178283861-178283911	HAEpiC	amniotic membrane:	n/a
20	chr5:178283861-178283911	PFSK-1	brain:	n/a
21	chr5:178283861-178283911	ECC-1	luminal epithelium:	n/a
22	chr5:178283861-178283911	HEEpiC	esophagus:	n/a
23	chr5:178283861-178283911	AG09309	skin:	n/a
24	chr5:178283861-178283911	AG04450	lung:	fetal
25	chr5:178283861-178283911	Caco-2	colon:	n/a
26	chr5:178283861-178283911	HRCEpiC	kidney:	n/a
27	chr5:178283861-178283911	ProgFib	skin:	n/a
28	chr5:178283861-178283911	H1-hESC	embryonic stem cell:	embryo
29	chr5:178283861-178283911	HepG2	liver:	n/a
30	chr5:178283861-178283911	HCM	heart:	n/a
31	chr5:178283861-178283911	U87	brain:	n/a
32	chr5:178283861-178283911	CMK	blood:	n/a
33	chr5:178283861-178283911	SK-N-SH_RA	brain:	n/a
34	chr5:178283861-178283911	BE2_C	brain:	n/a
35	chr5:178283861-178283911	MCF-7	breast:	n/a
36	chr5:178283861-178283911	ovcar-3	ovarian:	n/a
37	chr5:178283861-178283911	A549	lung:	n/a
38	chr5:178283861-178283911	AoSMC	blood vessel:	n/a
39	chr5:178283861-178283911	PANC-1	pancreas:	n/a
40	chr5:178283861-178283911	HMEC	breast:	n/a
41	chr5:178283861-178283911	GM06990	blood:	n/a
42	chr5:178283861-178283911	HUVEC	blood vessel:	n/a
43	chr5:178283861-178283911	GM12878	blood:	n/a
44	chr5:178283861-178283911	SAEC	small airway:	n/a
45	chr5:178283861-178283911	HRE	kidney:	n/a
46	chr5:178283861-178283911	HEK293	kidney:	embryo
47	chr5:178283861-178283911	NHBE	bronchial:	n/a
48	chr5:178283861-178283911	HIPEpiC	eye:	n/a
49	chr5:178283861-178283911	PrEC	prostate:	n/a
50	chr5:178283861-178283911	NH-A	brain:	n/a

No data

Variant related genes	Relation type
ZNF354B	CpG island

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10050708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249598	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11746144	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12655480	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13153458	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157356	0.95[ASN][1000 genomes]
rs13168290	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185338	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34489756	0.94[ASN][1000 genomes]
rs3922929	0.97[ASN][1000 genomes]
rs6858885	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6859072	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864114	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869885	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870961	1.00[ASN][1000 genomes]
rs6874387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875162	0.97[ASN][1000 genomes]
rs6877198	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878261	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891035	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6898983	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7445694	1.00[ASN][1000 genomes]
rs7446225	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7447547	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716970	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329058	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9716846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv462574	chr5:178269682-178313078	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv600463	chr5:178269682-178313078	Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv823352	chr5:178279625-178296623	Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178263600-178286400	Weak transcription	Right Atrium	heart
2	chr5:178282000-178286400	Weak transcription	K562	blood
3	chr5:178282000-178286600	Weak transcription	Placenta	Placenta
4	chr5:178282400-178286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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