Variant report

Variant	rs9329168
Chromosome Location	chr8:8666991-8666992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8663729..8665555-chr8:8666802..8669235,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10087950	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091646	1.00[ASN][1000 genomes]
rs10092552	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093805	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094026	1.00[ASN][1000 genomes]
rs10099757	1.00[ASN][1000 genomes]
rs10102732	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103502	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105070	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109078	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109886	0.83[YRI][hapmap]
rs10112354	1.00[ASN][1000 genomes]
rs10113100	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503390	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503391	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992051	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154792	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404896	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413895	0.90[EUR][1000 genomes]
rs28447349	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481744	1.00[ASN][1000 genomes]
rs28513197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521483	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549049	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581487	1.00[ASN][1000 genomes]
rs28609361	0.80[EUR][1000 genomes]
rs28698264	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702056	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28823269	1.00[ASN][1000 genomes]
rs28870140	1.00[ASN][1000 genomes]
rs28886957	1.00[ASN][1000 genomes]
rs55736184	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091524	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218435	1.00[ASN][1000 genomes]
rs66876829	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014389	1.00[ASN][1000 genomes]
rs73184206	1.00[ASN][1000 genomes]
rs73198291	1.00[ASN][1000 genomes]
rs73198299	1.00[ASN][1000 genomes]
rs73200025	1.00[ASN][1000 genomes]
rs73201845	1.00[ASN][1000 genomes]
rs73201853	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839324	1.00[ASN][1000 genomes]
rs9329170	1.00[ASN][1000 genomes]
rs9650614	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1824870	chr8:8583943-8699382	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8637600-8679800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:8653800-8674800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:8654000-8671000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:8655200-8680600	Weak transcription	Colonic Mucosa	Colon
5	chr8:8655600-8673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:8655600-8685600	Weak transcription	Fetal Brain Female	brain
7	chr8:8655800-8669000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:8655800-8669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:8655800-8669200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:8655800-8669200	Weak transcription	Thymus	Thymus
11	chr8:8656000-8669600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:8656200-8667000	Weak transcription	Placenta	Placenta
13	chr8:8656200-8669000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:8656200-8669000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:8658200-8668800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:8658200-8669000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:8658400-8669200	Weak transcription	Fetal Intestine Large	intestine
18	chr8:8658400-8675200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:8658400-8687200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:8659400-8671600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:8660200-8684400	Weak transcription	HSMMtube	muscle
22	chr8:8660600-8669000	Weak transcription	Dnd41	blood
23	chr8:8662200-8668200	Weak transcription	Primary T cells from cord blood	blood
24	chr8:8662400-8667000	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:8662400-8668400	Weak transcription	Fetal Intestine Small	intestine
26	chr8:8662600-8683400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:8662800-8679800	Weak transcription	Brain Angular Gyrus	brain
28	chr8:8663000-8667200	Enhancers	K562	blood
29	chr8:8663400-8691800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:8663600-8668000	Enhancers	Fetal Heart	heart
31	chr8:8663600-8681400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:8663800-8667000	Weak transcription	Adipose Nuclei	Adipose
33	chr8:8663800-8667600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:8663800-8669000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:8664000-8667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr8:8664000-8667000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:8664000-8669200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr8:8664000-8669200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr8:8664000-8669200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr8:8664000-8673600	Weak transcription	Stomach Mucosa	stomach
41	chr8:8664000-8678600	Weak transcription	Spleen	Spleen
42	chr8:8664000-8682400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr8:8664200-8667000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:8664200-8668000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:8664200-8669200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr8:8664200-8675000	Weak transcription	Hela-S3	cervix
47	chr8:8664200-8681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:8664200-8691400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:8664400-8667400	Enhancers	A549	lung
50	chr8:8664400-8668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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